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11-6172-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30387870 [Map]; Strand: w
      • AT1G80850.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: -348; Region: promoter
    Flanking Genome Sequence: 11-6172-1 - 5-prime edge 
    TTCAAAACTA TGGGTCTTCT TAACTCTTAA CCCGACAAAG CCAAACTAAA 
    AATTAGTTGC TTGCTTATTG CTTAATGATT ACTAGACAGA TTAGGAATGT 
    TTTGTCTTCT ATCAAAACCA TGCCAAGACA AGAGATTTAA TTACACCATA 
    AACAAAACTT CTTCTTTCGT ACTCGAGTCC CCACATTTTG TGTATTTACG 
    TAGATTTCAC ATAGTTTTGA ATAATGACAT ATTTTTCCCA AAAAAGAATA 
    ATTACATATA TTCCCGATAT TTTGTGTTTA TTACAGATAT TTCCTATAGA 
    TTTGTTTATT GCAATCGCTC CTTAAAGTTC TGTTTATTAC ATTTGTTTCC 
    ATTAGTTTTT ATTTATTACA AATGTGCCCT ATATTTCCAG TTGGTTCTTT 
    GCAGCAGATG CATCATCATT GGCTTTGGCA TAAAGGGTAA ATATAAACTT 
    AATAGTACTT GCTTCGACAA TTCTGTAGAC TACCGATAAC CCGAGAAAAG 
    GTAACTGCAT TATCCATGAA AGTGTAGCAT CAGTTTGAGT ACAAAAGAGA 
    ATACAAACTC NTTAAGAAAA CAGTCAAGAC CTGACGTTCA TGGGAGTNGA 
    GCTCTTCTAA GACTAATGGG GNATGCTTAG GAATCATGAN ATGGATTTGG 
    CNCGAACATT TGGATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30387754 [Map]; Strand: w
      • AT1G80850.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: -232; Region: promoter
    Flanking Genome Sequence: 11-6172-1 - 3-prime edge 
    GTTTTGAAAC TTGAAACAGT CCTTACTGGC TAATTAGATT TTAACCCGGG 
    GTTTTTCCGG GTCGGGTAAA CCAAACGATG ACGTGTCAAA CTGTGACTGG 
    CTAACTACAA CAACTCTTCC TTGGTACTCT TCTCTTTACT CGCTCCGGAT 
    TCCTATCGTT CTCGATCGGA AAAGTCGTCT CTTTATTTTT GTTTTTTGGG 
    TTCGCCGAAG TAAAAAAAAA ANAATAAGGA TTTTCTCATT AAATTTCCAA 
    ANATCAGNCT TTNGTATGTA TCTTCACTTT CTTATNAATG NGTAAACCTT 
    ACTCATTCCC GNGATCCTAC TTTGGGATTT CNCTANAAAA AGTTTAGGNG 
    ACAACCTTAA TTNAAGTTTG TAAATGCAGG TCCTTTNTTT NTAGGGTTTA 
    TCNAAATNGG GGTAAATCTT TNGNAATNGG TTNGAAATTT TTTNTTTTGG 
    GGAATNGCAA TTCATTAGTC GTCGGGATCC AGNGGGTTTT TAAGGGAAGT 
    AAGGCATTTT CNATATTCGG AAACTTTTAG GNNAATGNNG GCTCCACCNN 
    AANTTNGGNC TGGGGATTNN TCCNACCNAA AATNACNANN CNGGGCCGNN 
    NACCACNCGN GNNNNNNNA

AT1G80850.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR