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11-6201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514185 [Map]; Strand: w
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1457; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1713; Region: intergenic
    Flanking Genome Sequence: 11-6201-1 - 5-prime edge 
    CNNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCNC TCCATTATTA TTATTCNTTT CATTTCTNAC 
    TCAATTTCGC AGNNNTCTAC TTTTCTTGCT TCTCAATGTT CAACGACATT 
    ACAATTATTA TAAATATACA AAAAGTTAAC GTAGTTTTAA TATATTGGCC 
    AAGGTTAGTG AAATGTTGTT TAAAATAGTA TTTCGATGTA CAAGTTGGTT 
    TTTTAATTCA CGGGTTTGCT CATACGTCGG CCGCAGAAAT AGCGAATCTA 
    TGGGTATTCA CTTAAGTTGC CATGTTGGGT AATTTATTTG ATTATTGTTT 
    AACCAACAGC AATAAGAGAG AGAAAAGATT GTATTATGAT TTGATGAACA 
    AGATAAGGTT GTCCATTGGT CAAAACATTC CCCAAGTTGG GATATATTTC 
    TATTTTCATC ATCCTTCCAT GTGATGTGCC GTGCGGCAAA TCTAGAATAA 
    TGTACTATCA AAGTTGTCAA AAAGTAAAAA AGTAAAAAAA CAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19685017 [Map]; Strand: c
      • AT2G48121.2 - [+] show detail - LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonu...
        Distance: 2626; Region: intergenic
      • AT2G48130.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 49; Region: intergenic
    Flanking Genome Sequence: 11-6201-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTANCGACCG TTACCGACCG TTTTCATCCT 
    ATGATATGAG TAATCAAAGG TATGATAGTA ATCAAAGACA TGATTCTCTC 
    CTTAATACCC AAAACCACTT TTGTCTAAGG ATTTTGCTTT TGAAATGTGG 
    AGTTGTTGTT TCATATGCAA CCATAAATTC AGTAATTTAT GGCATCAACA 
    AAAAGATAGC AATACAAACA AAAAACATGT CTCGCTTATG ATCAATCTGG 
    CACAGCAAGT GAAATGAAAT TACCAAATAC ATGAACTCTC AGAATTGGTT 
    AAAGAAAAGA AGAAGTGCAG ACCACCAATA CAGCAAACAT AAGAAAATGC 
    AGCGGCAAGG GGTCAACATT CCTGCTGGAC GAGCCGGTAC CAACGGAGGG 
    AACTGTCTTG GAACCACCTC CAACTCCTGT GTACCGATGT GCAAGGAGAA 
    TGTATTCAAT AAACTAAAAT CAACCGTTGA TGGTTTGGTG ATATATAGTA 
    AGAGGAGTAA GTACCTGAAC GAGCACCCGG CAATGAGGTT GGGGTTAGTG 
    TCACATCTGG GGTCTTTTCC GTCGGTGAGG GTGCGGGAGG CTGTGCTGTT 
    GGACCAGTGG CCGCTAATTC ACAAACACTG TTATGAGTGA AACAATATTA 
    TAACGCATAG GATAGAAAAA TATAGTTAGG TGGGATACCG TTGCATTGTG 
    TGAGGGGAGG CGTCTGAATG TTGCAGGCAT TGGGGAGCTG CAAGGCCTGT 
    GTGCGGNTAA T

AT2G47560.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47570.1

Model type
Protein coding
Short Description
Ribosomal protein L18e/L15 superfamily protein
Computational Description
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 755 Blast hits to 755 proteins in 295 species: Archae - 15; Bacteria - 0; Metazoa - 328; Fungi - 154; Plants - 126; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48121.2

Model type
Protein coding
Computational Description
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1).
Link
InterPro Scan - TAIR

AT2G48130.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1201 Blast hits to 1197 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR