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11-6219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 354642 [Map]; Strand: c
      • AT1G02020.1 - [+] show detail - nitroreductase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G02020.2 - [+] show detail - nitroreductase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6219-1 - 5-prime edge 
    GCCATGACCT TCTCTTCTTC TTCTTCTTCT TCTTCTGTGG AAAACCCTAA 
    CAAGGACGAT TCCTCCTCTT CGCTTGAATT GGTCCTCAAG TACCACAACC 
    AGACGAAGCA CCTCCTTGAA CGGTTACAGC NGAGAGGTCC TCGTGGTCTC 
    GACTGGGCCA ATCAGCCTAA TCCCTTCCGC CGGTACCTCT CTGCTCCTCT 
    TCTTCCTCTC CAACACCCCA ATCACGACAT CGACGACGAC TCCGACTCTC 
    CTCTCTACTC TACTCTATTC GACTCGCTTC CTCCGNCNAA ACCCATCTNT 
    CTTCCTACAA TCTNTNACCT TTTNTANNAN NNTNTNNNTN TNTNNNNNNG 
    GAANANCNCN NNANNANNAN NNNGGNNNNN NNANNNCCCN CNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 148270 [Map]; Strand: w
      • AT1G01390.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-6219-1 - 3-prime edge 
    TTANNAATGA AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC 
    AGACCATGCT CAAGATAAAA AATGCTTCAA TATTATGCAT TGTGTTGCAA 
    GGAGTCACCA ACNTATTAAT AAACTGTAAT TTTGACCTTG GTCAAAATCA 
    AAATGACCTT TGTACAACAT AAAATTTAAA AGGTAACATA CCTTTCATCT 
    GATTACTAGA TTGTGGTATC TTTATATAGT TTATTTAATA TGATAATAAA 
    TGTTTTTATG CACTTGTAAT CAATGTATAT ATATTTTGGA TTTTGTTGTG 
    TATGTGAAAC GGTTTTATCA CATGCCTAAT TTAGGCCCAG CAATCTTTTT 
    CTTATGCCTC AGGCTCAGTG CTACAAGCCA ATACATATCC ACAAATTATT 
    TTTTATGATT GATTAAAACT TTACCTTCAA TTTATTAAAG GTTCCATTCG 
    TGATTCATAA AATCCCGAAC ACACAACTAC TTCAAAACTC AGGAACAAAA 
    CTGCAGAATT ACCAACGAAT ATATATATGT ATATTTTTCA TTCTTTTCTC 
    TCTCATTATT ATAAAAATGA TATAAGAGTT GGCCATCAAC GTAATTGANA 
    TCTTCGATGA TTCTTCATCA CCCAAAACCT CTCAATCTCT TCTGCTGTTC 
    TTCCTGGAAT CCTCCCAGCT ATTAAATCCC ACCTTTACAA ACAAACAAAC 
    TAATCTTCAA TTCCCTTATT AAAATCACAT ATNTTGAAAG ATTTAACCAA 
    AAAAATGTTA NGGAATAN

AT1G01390.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7970 Blast hits to 7908 proteins in 429 species: Archae - 0; Bacteria - 359; Metazoa - 2438; Fungi - 37; Plants - 5024; Viruses - 48; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02020.1

Model type
Protein coding
Short Description
nitroreductase family protein
Computational Description
nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 762 Blast hits to 681 proteins in 314 species: Archae - 126; Bacteria - 594; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02020.2

Model type
Protein coding
Short Description
nitroreductase family protein
Computational Description
nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR