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11-6258-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5747217 [Map]; Strand: c
      • AT5G17430.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1649; Region: intergenic
      • AT5G17440.1 - [+] show detail - LUC7 related protein
        Distance: -2545; Region: intergenic
    Flanking Genome Sequence: 11-6258-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTT 
    GCATGCGTTT AAATTCTAAA TACGAAAGAA CGGCTGAGGT TTTATAATCA 
    AAGTTTTGTG TAAAAAACAG TACTTCAAAA CCATATGTAT CATATTATGC 
    TATGTTTCTT GTAAATACAA AAACTAAATT TTTTGGGGGC CGTNANCCAN 
    NCANGCNNNA AACACCTGTA GATTGAGATT CCATCTGAAA ATAAAAGGAA 
    ACACCTGTAG ATGAAGATAT CTACAACTGA CAAGAGCGTG TGACCAAAAA 
    TAGGAAAATG AAAAATCTGG AAGTAAGTAG AAAATGAGAA AAAGAAAGAA 
    AAGTGGTAAA AAACAACAAA AGAAAAAGAA GAAAAAACTG TTATTAAAAT 
    CAGATGGATG AGTTTGAGAT ATTTGTCAGT ATAAATGCTA CTGCTACTGC 
    AGCTGCTCTA CCATTCCCCC ACCCAATACC TTTTACATTG CCCATTCATT 
    GTTCATTTGC ATGCACTTTT TTTTACTATA TAGTNTCCAT ATATATGCNT 
    ATACACTANT ACACACATTA GTACTATATN TCATTGATGG CAAATTACTT 
    CTTTGAACTT CTTTATCCGN AACTAANAGT TGCAAGACAA TTNCNNATAA 
    CATGTNTTNA TTANNCGGAA GNATTTTGNC TCTCTTATNT NCCTCNAATN 
    TCTAANAACC CNNNCTANAC NGANNGGNNN NCNNNGNNTN NGNNCNGNNN 
    GNNNANAN

AT5G17430.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.
Computational Description
BABY BOOM (BBM); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17440.1

Model type
Protein coding
Short Description
LUC7 related protein
Computational Description
LUC7 related protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR