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11-6280-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6037706 [Map]; Strand: w
      • AT1G17560.1 - [+] show detail - Ribosomal protein L14p/L23e family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-6280-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCACAGGA CCAAACACTC GGGTACCAGT CGGTTGGTTG 
    TACTCCATTT TCCTCTTGGA ACCATGTGAA TTATTCTGCC CTTTCTTTTC 
    CTTAATGCCA ACAACTACAA TGGCATTGTC ATCAAACTTG ACTTGGCTTC 
    CATCAGCACG TCCTTTAGGC ATCGCAGCAC GCACAACCAC ACCGTACACG 
    ACCATCCCTT TCTTCACTTT ACCTTTTGGG ACAGCGTCTT TCTTTACTTT 
    TTTTTGAACA ATTGGGTTAG CTTCTTTCAC TGAACCAACA ATGATATCGC 
    CAAGTCTTGC TCCTTTCTTA CCTCTCAGGG ATTGAATGCA CATCACCTCT 
    TTAGCACACG AGTTATCCAC GCATTTGANA ATCGTCCCCA TTTGAATGAA 
    TGTCCTATGT TGTTGCTGTG AATTGGAAAT CATCAGGACA CACAATTCAC 
    AGGTTATACC CCACNAATGC ATATGAANAA AGTTTCATCA AGGACGTATA 
    TTTGANAAAA GAGGCTTGAC CTGAGAGAGG ATGCTTCCAT TCATCATTCC 
    ATTGGAGGAG GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5788246 [Map]; Strand: c
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-6280-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    AAAACCCAAA GACTTATTTC AGAAGAAGGG CACTTTTTTT AATCTACATT 
    ATTAGCTACC TCAAGATTCC ATCCGTCAAT GGTGGTCAAA TGCAGTCAAC 
    TTCAGACAAA CGAGCAATAT TTGAGTACAA AAGTCAACGG AGAGACTCTC 
    TAGTAAAAGG CTGCTGAACA CAGAACACAT TCACTACCAA AAAACTAAAA 
    ACAAGCACAT AAGCCAGTGA ATGAATCACA CATTGAATAG TCACCACTCA 
    CCAACCTAGA CCTAGAGAAG ATAAGATCAG CTTCATGTTA AGCTCCCATT 
    CACTCCAAAA CTGTTTGATA GAACATATAG ATTGGGCTAA AGAGCTCAAT 
    TCCAACACAG TAACATAAAT TCAAATTAAG TCAAACAAAC GAATCAAAAA 
    GCTAGTGTCC GCTATCAAAG TCACCAAAAC GATAGATCTA TGGAAACTCG 
    TTTAAAGCCA CTGCTAGATC GAGAACCTAA GTATGGAAGC AAAGGAGCTT 
    AGAGTGATCT CCGGGACAGT GGCTTCTATT TGCAATGTAC TCGAGACCAA 
    TTGACCCAGG AATAAATCGA ATATACGCCA CGAAACTCAA TGTGAAATAC 
    CAAGATCTAG CTTGAAGGCC GATTTTCNTA CNANTAAGAG ACGAAGAACG 
    AANTGANAGA CGAGGAAGAC GAAAAACGAA CCTNTNCTGA CCAGCNGNGT 
    CCCAAATNTG

AT1G16920.1

Model type
Protein coding
Short Description
RAB GTPase homolog A1B
Curator Summary
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational Description
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17560.1

Model type
Protein coding
Short Description
Ribosomal protein L14p/L23e family protein
Curator Summary
Mutant shows abnormal ovule development
Computational Description
HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2); Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306; Bacteria - 5487; Metazoa - 280; Fungi - 278; Plants - 760; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR