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11-6334-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19614856 [Map]; Strand: w
      • AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -921; Region: promoter
    Flanking Genome Sequence: 11-6334-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAAAG AGGAGGGCAG AAGACGTAGC AGTCTCCGTC 
    GCCTTCAATC CTTCTGGCAA TTTCGACATC TCTGCCTTCG AGAATGACCA 
    AGGTTCGTAC TTGCTCAATT GATTCAGAAT GATAAATAAA AAAAGGCTGC 
    TACTAATTAA TTATGTGAAA GGCGTAGCAG ATTCAGATAA AGTGGAACCT 
    CCGATGCCTC CAACGACCGG CCGGTACGAA GTAGTGATCG ACAACGACTC 
    AATTGGGCGG CTTGACCTAT CCCCGTTTCA GAGAGCCATC GGCATAACCT 
    CGCCTGATGA TTTTGGTGTA GCTGAACCAA AACGGTATTT GGATCGAACC 
    ATCGGATTCA CCATCAATTA CAAGAGAGAA GACCCCGGGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19614844 [Map]; Strand: w
      • AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -933; Region: promoter
    Flanking Genome Sequence: 11-6334-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    CACACCACCC GGCGGTCTCC AACGCCGGCA ATTGAACCAC TGGGAACAGC 
    GATACGTGTC TCGGCGATGG GATAAGCCAC GGGAGAAGAA CTGCCTTTGT 
    TGCCATTCAC AGACGCTATC TCTCTTTGTG TCTTAGTCTT CTTTTTATCC 
    TCTTCTTTTG GCCTTTTCTT CATTTCTTTC CATTTTATCC TTTTTTCCTT 
    CACCGCACAA ATACATATAT TTTGCTGTCT GTCGTAAAGG TTTCAAATGT 
    TAAGCAGAAT GCATTTCTTC AATCGTTCAG AAAAATGAAG AGCTCTCTTC 
    TTTAATGTGG AATGTTTTCA ACTCAAGTCA GCCTCCTCGG TCTCATGTAG 
    ATGTAGGCAT TGTCGAATCT CCTTCACTGT TGGTGAGGTG TTTCAGGAGC 
    ATCTGCAAGC T

AT2G47910.1

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47910.2

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47920.1

Model type
Protein coding
Short Description
Kinase interacting (KIP1-like) family protein
Computational Description
Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G03470.2); Has 342 Blast hits to 342 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 4; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR