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11-6370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107938 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6370-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GAAACTTCAC GGAGACGGGG TTCGCCACCG 
    TCCCAGTAGG CCCAGAAAAC TTCCCCGGCC TTAATACATT AGGCATCTCG 
    TTTGTCCGGG CTGATCTCAA ACCCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107987 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6370-1 - 3-prime edge 
    GTTTCCGGCA GTTTTTAGAC CGGAAAAGAC AAAATCTTCG GTGGTTACTT 
    CGGAGGAGTT TTTGCAAGGG AGATTGGTGG AGAAGTGATG GTCATGGTAA 
    GGAGATGTCA CAGGTTTTGG TATGCAGAAG TCTTGGATGG GATCAGGGTC 
    GGAAGCTAAT GTGAAGCATA CATTAAAACA AAGAAGACAA AGAGCTTTTA 
    GAAGAAACAA AGTGTTTGCT TCCATTTTAC TTGAGGTCCA TGTGAAGAAG 
    AGTTGTGTTA CATCGGTTTA AATAAGCATA TGTATATCTG GTGGGGGTAA 
    ATGAGAGACT GGTTAAGATG GTTACTTTTT ATCAACCAAA ATTTCGTCTG 
    TGAAATTAAG GTGTGGGTTT TTGTACCAAA TGAAAAACCA CGTTTGGATA 
    TGTGGTTTTG GTTATGGGAG TGGTTAGGCC GGTACATTGA CTGATAAACC 
    CCTTTTGTGG CTTGATTGAC ACATCTCTTA TGAATTTACT ATTCNNCTAT 
    GTNATTCNTA NTTNCNAATT ANTACNNTNG NGCNTNNAAA TGGAAATATN 
    ACTGGAGTCC NNNGNTTNNG ATNANNNNNC NNNNCC

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR