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11-6442-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1571671 [Map]; Strand: w
      • AT1G05370.1 - [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-6442-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGCATTT 
    TCCCATCCTA CTTTATGTTT TTAACCTCTC GTTTTCATTA TCTTAAAAAT 
    TTAGACCGTT TTTTAAGTAA AGCAATTCGG ACCTCTAAAG ATGTAACGTA 
    CGCAGTGTTC AAATATATAT ACAGTGTATT TTAGTATAGT ATATCAACAT 
    ACCAAAATAT TTGTATACAT ATCTTGGAAA ATAAAGACTG TAAATATATA 
    AACGTTTATC CATATATACA TACATATACA TTTCAAACTT GTATAAAGAT 
    ATACAGTATA TAGTGATTGA GAATGTGTAA TGATCAAGAG AGAGAAAGTA 
    CCAATGCCAA GAGAAGATCT CCATGAAAGG CAAGACCTTA ACTGTTTAGC 
    TGCTTTCTTC ACATTGTCTC CTTTTATTCT CAAGAATCTA CCGACACAAG 
    CTCTGTTACA GAACTTCTCC TGCAACATTC ATTAACCCAA TAACAATATA 
    ATGAATCAAA ATTTTCTATT AAAAAATAAA ACATGTTCAA GTAACGGATA 
    TATAATAATG AATATGCCAC CCAACCTGTT TAAGAGTTAG AGGAGAATGT 
    TTACGAAGGA GATGAAGAAC AGCTTCGACT TTGTCGTCGC TCTCTACTAC 
    TGAATGATGA TCCTTCTGCT CTTTCTTTCC CATTTCNAAG ATNTCAACCC 
    CAAAAATGAC TCCTCTCTTN CTTNTTTTTA TTTGNGAAAA AAGANATTGG 
    TNATTAGCCC GTGGAACAAA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1625153 [Map]; Strand: c
      • AT1G05500.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6442-1 - 3-prime edge 
    GGTTTCATAG TCGGCGTTGT AATCGGACTC CTCGTCGGAA TCGCAATCAT 
    CATCGGCTTT GTCAAGTTGG AGAATT

AT1G05370.1

Model type
Protein coding
Short Description
Sec14p-like phosphatidylinositol transfer family protein
Computational Description
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT3G22410.1); Has 487 Blast hits to 487 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 189; Plants - 251; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05500.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Curator Summary
Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.
Computational Description
NTMC2T2.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR