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11-6468-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1748237 [Map]; Strand: c
      • AT1G05810.1 - [+] show detail - RAB GTPase homolog A5E
        Distance: -77; Region: promoter
    Flanking Genome Sequence: 11-6468-1 - 5-prime edge 
    GCATTAAGTG CACCTTCTTT AATGTCGTTA CCTTTTTCTT TTTCTATATT 
    TTCCTCCAAA TTATCAGTTT TAATTTACGA CTTTTCCCTG ATTTGTGTTT 
    TTGGTTAGTT ATTTTAAAAT CCACCACAGT TGGTGGACNT TCTTGGTAAC 
    GTAGGAGGGA GTTATATTTT TTTAACTTAC AAAACCAGAG TGTATGTATA 
    ACTAAAGAAA TTTCATCTCT AATAAAGAAT AAATCTTTCT CTGTAACGTG 
    CATACACGCT AGTTTTGTTA ATAATAGGAA AGTTAATGCT ACTAATAGTA 
    TTCCGGTTCA TACATTTTAT GCCAATTTTC ATATCAACCT ATATCTATTT 
    GCATGTTTCT AACTACTACT AAATATATCA TAATTCATTA TATGATCAAC 
    GAGATTCACT TTGGTCTTTG GTACGTGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1748353 [Map]; Strand: c
      • AT1G05810.1 - [+] show detail - RAB GTPase homolog A5E
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6468-1 - 3-prime edge 
    CTTAATGCGC AGTATGTCCT CTTGTGCCAG CTTGTTGCAC CGTCTTCCGT 
    CTCCTCCTCT TTCCCTCTCT CTCTCTCTCC AAACCAGTCC TACTTCTCTC 
    TCTAGAAACC TAGGGAAGAA GAAGAAGACG GTGAAGCGAG CGATGTCTTC 
    GGACGACGAA GGAAGAGAGG AGTATCTCTT CAAGATTGTT GTTATCGGCG 
    ACTCTGCCGT CGGTAAATCT AATCTTCTAT CTCGTTACGC ACGTAACGAG 
    TTCAGCGCTA ACTCCANGGC GACGATCGGA GTCGAGTTTC ANACGCAGAG 
    CATGGAGATT GAAGGTAAAG AGGTCANGGC TCAGATTTGG GACACTGCTG 
    GTCANGAGCG TTTCCGTGCC GTCACTTCCG CTTATTACCG TGGCGCTGTC 
    GGTGCCCTCG TCGTTTACGA CATTACCCGC CGCACCACTT TCGAAAGCGT 
    TGGACGTTGG CTCGATGAGC TTAAGAGTAA GTCTCGATGT GAATTATGCG 
    ATTGACTATC GATTTAGGGG ATC

AT1G05810.1

Model type
Protein coding
Short Description
RAB GTPase homolog A5E
Computational Description
RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).
Link
InterPro Scan - TAIR