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Mutant Lines
11-6488-1

11-6488-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 249247 [Map]; Strand: c
- AT1G01680.1 - [+] show detail - plant U-box 54
  Distance: -880; Region: promoter
- AT1G01690.1 - [+] show detail - putative recombination initiation defects 3
  Distance: 0; Region: exon1 (CDS)

GCGAGATGGC ACCTTAAATT AGGAGGAAAG ACAGAAATAG ATTTCAGATC 
GCAGGCTTTG TTAATATTCA TCTTCATCAC CCAAGATCTC ACTACCCAGT 
AGACGAAGAC GCAGCAGCAG CTATTCACNG ATAATGAACN TTTATGCTAT 
AGAGAGAGAG AGAGTGAGAG AACTGAAACC GAATTTTGAA TTTTGAAAAG 
ATCCAGAGAT AGAGCGACTG ACTGAGAGGA ACGAAAAGTG GGAAATTATT 
TTTATTTTTG TTTTAAGTTT TTGCTCTTGT GCAATGAATA TAGCGGGGAA 
GGGACGATTT TAGAGGCCCA TAAAGCCCAT TAGCTGTGTA TAAATGGCCC 
ATACTGAATG CAAACCCAAT AATTTCTAGA TGAAAGTGAC AATGAAAACG 
ATTTATACTG AATGCAACAC AACATTAAAA AATGCATCAC ACAAACCGTT 
AAGAACCAAA TACAGTATGT TTTCTTTTTA ATATCTTCAC ATTCCTTTTT 
TTTAATTACA TATACTAATT GCCAAACACA CAAAAAATAA AAAAAGNGGT 
ATCTTTTAAA ATCATACTAT TANAACTAAA ACCTGCAGTG AAGTCAACAT 
TTATAAAAAC AAACTTGATG TATACGTGTA CACCAAAACA TCTCCCGAAA 
CCAATAATTT CCGACAATAT TCTCANAAAC TTAATGT

3 prime edge [+] show sequence

Chromosome: 1; Position: 249360 [Map]; Strand: c
- AT1G01680.1 - [+] show detail - plant U-box 54
  Distance: -993; Region: promoter
- AT1G01690.1 - [+] show detail - putative recombination initiation defects 3
  Distance: 0; Region: intron1 (CDS)

CTTGATCTCG CTTCTCTCCG TATCTCTCTC TTTCACAATT TGATTTGAGA 
TTACACTGCG ATTTCCATCG TTTAGGGTTT TTGTTTTGTT CCGAATCTGG 
TTTGTGACTG GAGACGAGTG TCAGTGATCT GTATGTGGAC ATTGTTTTTG 
ATCTATTACC AACTAATTTA TCGCTTCCCA GGAGAATCCA TTAGGGTTTT 
GGCTACTGAT AATGTTTACT CTTTGGAATT AGAAGGAGAT CAGCAGAACC 
ACAAGCATCT CAGCAGCTTC GATCTCAACA GTCACAGCAG TCCTTCTCTC 
AGGGACCTTC TTCGTCTCAG CGTGGTTGTG GTGGTTTTTC TCAGATGACT 
CAGAGTTCTA TCGACGAACT CCTCATTAAC GATCAGGTTT GCTACTTAGC 
TATAGATCGT CTCTTCTTCT GATTATCGAT TTCATATTTC TGTGCTGGCT 
TTCCCTTTTT GCACAGAGAT TTAGTTCTCA GGAAAGAGAT CTCTCTTTGA 
ANAAGGTTAG TAGTTGCTTA CCTCCAATCA ATCATAAACG AGANGATAGT 
CAGTTGGTCG CTTCCTANAT CTTCAANGTG GTCTTTCNAG AAGATNGAGC 
TCCTGCCTTC AATTGGANAG TCTAAGTGTA AGNATGCTCT TTCTAAATTC 
ACAAATTAAC CGGGGGGATN TGTACCTTAA TTNGATTCNA CCTTTTCTTG 
ATAGGG

AT1G01680.1

Model type: Protein coding
Short Description: plant U-box 54
Computational Description: plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01690.1

Model type: Protein coding
Short Description: putative recombination initiation defects 3
Curator Summary: Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.
Computational Description: putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR