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Mutant Lines
11-6519-1

11-6519-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 1280745 [Map]; Strand: c
- AT1G04610.1 - [+] show detail - YUCCA 3
  Distance: 0; Region: exon2 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCGA GTGTATCCAG TAGCTAGAAT AACGGAATCA 
ATCTCAAGAA CACGGCCATC TATTAGCTCA ACTTTGCCTT TGCCGAACTT 
TATGATTCCG GGGACGATTT TGATCTTTCC CGATCTGATT TTGGGTAACG 
CTCCGATGTC AAGAACCGGA GTTTTGCCTT CCTTGTTCTT TAGCTCTAAC 
GGTCCAATTT TCGGCCTTTT TAGACCGTAT TTATCGGTAT TCCCCAAGAT 
AATCCTCGCC AGAAAGAGTA TAGTCTTGTC CGCGAGCCAA ACGGGCATAT 
ACTTCATCAT CGTAACTCCT AATTCAAACG TTGATTTCCC AAAAATCTCT 
CTTGGTAAAA CATGAACCTG ATAAAATCAA GAAAGGAAAC AAAAAAACAG 
AGTATTAGAT ACTGCTCTGT TTTAGAAAGA GTAACAGAAA CAGAGGATGC 
TCTGTTTTAG GGGCTATAAA GATTTGAACT TTTGGTACTT TTTTTTTTTT 
TTNGGGNAAA AAATTTNGGG TNTTNAAGGG GTNAAAAAAA ANNTTNGGGG 
GGTTNCCCCC GNNNTNGAAA AAANNNAAAA AANNNCCCTN CCGGGGNTTC 
CNNNNNCCCC CCCCAAAANC NTTTTCCCTN GGGCCCCNCC CCCGGATTTT 
TTNGCCCCCG NNGGGGAAAA NNNCNCNCCA AAANNCNTTA AAACCTNAA

3 prime edge [+] show sequence

Chromosome: 2; Position: 19607363 [Map]; Strand: c
- AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
  Distance: -633; Region: promoter
- AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
  Distance: -633; Region: promoter

GTACTTATTA GTGTCGCTGG AATGTTAGAT ATTGCCCATC CTGTCTCTTT 
TTTTCCATCG TGCCCTAAAA GTCAAACTAT GTATGGTATT AGCTAATCTT 
GAATAGGTTT AATTCAGTAC AGGGTTGAGA TAACGTCTAA TTGAAAACTA 
CCTTCATGGA GTAATAGTTA TCGAGGAACG ATGATGAGGT ATTAGTGGAG 
ATAAGCAGAT TTGGACTCAA TATCAAAAAT TAATGGTGGG ATCACCAGCC 
CGGACCGTCN ACCACGCGGC CCCTATAGAC AGTTAGGACT AAGAATTAGG 
TCAATAAATT CGTATGTGTA CTAATTTGGT GTGTTGAATT TTAATTGTAT 
TAACAGGACA ACGACTTCTT CTCCGATGAT GGGATACCAN CCCGGNCCGT 
NCCCACGGNT GGAANGGANA GGCNGNATNG NNTGCNGNNN GGNNNNCNAN 
ANNNGGATNG NNNGNNGCNN NNNNNGNNNC NNNNNNNGNG GNNNNNNA

AT1G04610.1

Model type: Protein coding
Short Description: YUCCA 3
Computational Description: YUCCA 3 (YUC3); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 7 (TAIR:AT2G33230.1); Has 9657 Blast hits to 9637 proteins in 1196 species: Archae - 33; Bacteria - 4899; Metazoa - 784; Fungi - 1494; Plants - 670; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47890.1

Model type: Protein coding
Short Description: B-box type zinc finger protein with CCT domain
Computational Description: B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47890.2

Model type: Protein coding
Short Description: B-box type zinc finger protein with CCT domain
Computational Description: B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR