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11-6523-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2828230 [Map]; Strand: c
      • AT3G09220.1 - [+] show detail - laccase 7
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-6523-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCNAC NTNACTGCCT NAGTCAATGG ACCTCACTGG GTTCCAGTTC 
    CACGCTACGT GGACGAAGAG ATGCTCGTAA CCATCGGTCT TGGGCTAGAG 
    GCATGCGCAG ATAACACCAC GTGTCCAAAA TTCTCAGCTT CTATGAGCAA 
    TCACTCTTTC GTGTTACCCA AGAAGCTATC GATCTTGGAA GCAGTGTTTC 
    ACGACGTTAA AGGGATTTTC ACCGCGGATT TTCCAGACCA GCCTCCGGTT 
    AAGTTTGATT ACACGAACCC GAACGTAACC CAAACAAACC CGGGACTTTT 
    GTTCACTCAA AAATCAACTA GCGCCAAAAT TTTGAAATTC AATACGACGG 
    TGGAGGTAGT GTTACAGAAC CATGCGCTTA TAGCGGCGGA GAGTCATCCC 
    ATGCATCTAC ATGGATTTAA TTTCCATGTA TTGGCTCAAG GGTTTGGTAA 
    TTATGACCCG AGCCGTGACC GGAGCAAGTT AAATCTCGTT GACCCGCAAT 
    CCCGTAACAC TTTGGCTGTC CCTGTTGGTG GATGGGCCGT GATCCGTTTC 
    ACTGCTAATA ATCCAGGTAT AAACTCTCTA TCCAATTCCT TAGTTATACT 
    AAAAATGTAA TTATATAGTT TAGAGTTTTA CAAAGGGCTA TTATTTGTTG 
    TTTATGCATG AAACCTAAAT ATTGGGCTAC ATTGTTTCAG GTGCCGTGGA 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2882871 [Map]; Strand: c
      • AT3G09375.1 - [+] show detail - pseudogene, putative eukaryotic translation initiation factor 4A-3 (eIF-4A-3/...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-6523-1 - 3-prime edge 
    AGTGAAGTTG CTGCTCCTCA TTTTCTCACT AATATAGNCC ACTTTTCGTT 
    TTGTGTTGCA GAAGATAACA GCTTTAGTGA TGATAAGTGT GTCGGTAAAG 
    ATCACATATN GTCTCAAATT TCCACTCCTC TTTCTCTACA GAAATAAAAA 
    AGTTTTTAAT TCCCTCAAGA GTCAACTCAT CACGCTTCAC AAGTATCTTC 
    ACCGGTTCCG TCATAAACTT GCTTGNCATC TCCAAAATCT CGTGAGGTAG 
    AGTTGCANAA ACCAAGCAAA CCTGAATATC AGGTGGAAGA TATCTGTATA 
    CATCATAGAT TNGTTCCTTG AATCCTCTGC TCAGCATTTC ATCTGATTCA 
    TCAAGAATCA AAAGGTTAAT AGCTCTGGTG CGTAGACTTC TCCTCTTTAT 
    CATGTCATAG ACACGACCAG GTGTTCCGGA CACAACATGG ACACCATGCT 
    CCAGCTTCCT TATGTCTTCT CCNAGGCTCT TCCCACCAAT GCATGCATGC 
    GCCTGGACAT TGGCGTGTGA TCCAATAGCT TGTATCGTCT TATCTGTTTG 
    TGAAGCCAGC TCTTTTGTTG GGATAATATC AAGGCCTGAA CCCTGCNTCN 
    GAANTNCCAN CAAATAANGA TGAGAATGNA ATTTGGANAT AACTTGGCAG 
    AAAAGTTAAA ATTGGAATTA GGGTATGAGG AANAGAAAAC NTNCTCTCT

AT3G09220.1

Model type
Protein coding
Short Description
laccase 7
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 7 (LAC7); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT5G01050.1); Has 10354 Blast hits to 8703 proteins in 1520 species: Archae - 53; Bacteria - 4205; Metazoa - 505; Fungi - 3603; Plants - 1597; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09375.1

Model type
Pseudogene
Computational Description
pseudogene, putative eukaryotic translation initiation factor 4A-3 (eIF-4A-3/eIF4A-3), strong similarity to SP|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF-4A-3) (eIF4A-3) {Nicotiana plumbaginifolia}; blastp match of 84% identity and 4.1e-163 P-value to GP|13957631|gb|AAK50586.1|AC084404_11|AC084404 putative translation initiation factor {Oryza sativa}
Link
InterPro Scan - TAIR