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Mutant Lines
11-6529-1

11-6529-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 73108 [Map]; Strand: w
  - AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
    Distance: -897; Region: promoter
  - AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
    Distance: 0; Region: intron5 (CDS)
  - AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
    Distance: 0; Region: intron4 (CDS)
Flanking Genome Sequence: 11-6529-1 - 5-prime edge
```
GTCCAAAGTG TATGTGAGGG AAATGAGCCC ACTGTTTCAT ACATATTACA 
TCATATACTT AGCTCTTTTA ACATTAATGT GTATTTATCT TATACATAAC 
ATAAAAACTT GGTCAAAAAT ATACGAATAC AAAGCCAGAC TAAAATATCT 
GCTAGGGAAC TTTACTGAAA CCCTAGATCG TAGATCCTAA GGCTAGTCCT 
AGCTAATGTA TGCTGGATAA AGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 72992 [Map]; Strand: w
- AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
  Distance: -781; Region: promoter
- AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon6 (CDS)
- AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon5 (CDS)

CTTTGGACTC ATGGCTGACC ATCCTCCCAC GAAGAAGGCT AACGTGCGCC 
AACAGGTTAC TTACTACTAC TACACTATAT TTATTTATTC AAATGTATAA 
AATGAGGAGC ATGCATGCAT TGATCATCAA AACATAATCG AGATATTTTA 
TTTTGGTGTA ATGAAGGAAG GAGAGGATGG GATGATGGGA AGAGAAGGGT 
TTTACGGTTC AGCTGCCAAC GTTGGGGTGG CCCATAACTA GCTACGAAGA 
CTTTCCCAAT CTTTTGTAAT CTTCAAAATG TGGTTACTTT CAGCTCAAAC 
TTAACTTTCT TATTACTATT TTATGATATT TGATAATCGA TCAGGAGACC 
TTTTTTTTTT TTTTNAAAAA ANTTTNNGNA NCNNCNAAAN TTTTNTTTNG 
NANTNAAAAA NNTTTNGTTT TNTNANTGCC CGGNTTTTTT TTTNANTTTN 
AAANCCTNNC NNNNCNNAAC NTACNTGGGT TTNNCCANNC TTAAANNAAN 
CGGTTTTTTT NTTTTTACAN TCCCNTTTNN AANTTGNNTT NGTTTNNANN 
NTTTGGGAAA AAANNNTAAN TTTNTTTNCG CNNNAAAAAA TTNACNANCC 
GGGNCGGNNA ACNCCCCTNC NCNNT

AT4G00170.1

Model type: Protein coding
Short Description: Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description: Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00180.1

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00180.2

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR