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11-6554-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30034597 [Map]; Strand: w
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: -696; Region: promoter
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: -696; Region: promoter
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: -803; Region: promoter
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -803; Region: promoter
    Flanking Genome Sequence: 11-6554-1 - 5-prime edge
    GGGAAAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCT ATGGTATCAT TTCCTTTGTA CAAAAAGTGA
    ATATCAAAAT GCATTGTATT AATTATATAT AAGTTAGTAT ATGGAGTTAG
    TTGTCCTCAC TGTCTTTATC TGGCGCAATC TCCTATGCCA CCATTCCCTC
    TTCACACGTA CNGTGTGCAC ACTCGATGTC ACATTTGTAT AAACACGTTT
    GCTTTTAGCG TGAGATCATC ACCATATTCC ATTTTTGGTG GGTCAGTTCT
    CTTTCTAGAT AGTTATTTGT AAGGACGTGA ATTAAAAGGG ATCGTCGTCA
    CTTGTTGAGA TAAAAGAAAA GATATATGGT CAGTTTCTGC ATCTTGGAAT
    CAACTTAAGG GTTGTCTTAA TTAATTTTGA TAGACCCTAC TTTAAAAATT
    AATTAGTTGC TTTCATTGGC CCTCAATAAG AAAAGCCAAA AAAGAAAGAA
    GACTGGTCTT GGAAGTTTGC CAACACGGGT AATAGATTAA TGGTGAAAAG
    GGCGAATTTT TTACCCAAAA CCCTAATTAA GTAGAAGTAT TAATCGAGAG
    CAAAAAAAAG AGAGAGAGTC AGTNGCCAAA AGGAATGAAT GGAAGAAAGA
    AAAAGGAATC TNTATAGGCA GCATATATTC NAGTATTNNT TAAGNNNATN
    GATNANCAAA AGGGAGGNGN GGAGGCNTTA ATTAATTTTT TNANAANANG
    TG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30034564 [Map]; Strand: w
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: -663; Region: promoter
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: -663; Region: promoter
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: -770; Region: promoter
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -770; Region: promoter
    Flanking Genome Sequence: 11-6554-1 - 3-prime edge
    TTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTTGGT 
    ACCTCCAAGT CCAACCGCAA AACAAAAGAT GGATAGTTAG TTGGAGAGGA
    TCAGCTGATG AAAACCAAAA GACACAGTTG TGAGAGAGCT ACTAGCTAGT
    GAGTACCACA TATATACGTA TATTGGGATA TATATATACC TTGAATCTTA
    CACATTTTGC TTACATCTAA AATAGAAAAT GAACCAGTAA TTAGTTTTTG
    TTTGGATC

AT1G79830.1

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.2

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.3

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR

AT1G79830.4

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR