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11-6562-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • desaturated green (PATO:0001272)
    (Seedling::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20773561 [Map]; Strand: c
      • AT5G51090.1 - [+] show detail - unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bac...
        Distance: -367; Region: promoter
      • AT5G51100.1 - [+] show detail - Fe superoxide dismutase 2
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 11-6562-1 - 5-prime edge 
    ATTTTGAGGT AATGCCCGAA TAAAGTTTCA CGAAATTTGA AAGCAATGGT 
    CTCATGCTTG TTGTGTTTTA TGCAGAACCG AAGAGCTGAA TACATAAATA 
    CATTCATGGA AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20773677 [Map]; Strand: c
      • AT5G51090.1 - [+] show detail - unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bac...
        Distance: -483; Region: promoter
      • AT5G51100.1 - [+] show detail - Fe superoxide dismutase 2
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 11-6562-1 - 3-prime edge 
    CTCAAAATCC AGATAGTAAG CGTGCTGTGT GGCACAAAGA GGGAAAAAGA 
    AAACTAAATC AGCAATCAAG AAACCAATCG CTTTAGGTGA AATTCAGATA 
    GAGAGAGATG AGTAGCATAT ATTATACCTC CCAGGTATCA ATGGTGAGAA 
    GTGGCTGCAT ATAAAGGACA GACCAAATGT GTGAGGAAAT AAATATCCTT 
    AGTAGCCAGC AACAAAGATT TTCTAGATAT TGAAAGTTAA GTCACTTACA 
    GAATAATCCC ATACGAGCGG ATTTACTGCA TTGGGCGTCT TCACTATAAC 
    AAGTTTCTTG TCTTCCTCCT TTGGGAGAGG ATTAACGGCA TTTGCAACGT 
    CAAGTCTATT CACCTTATCT GCATCAATTA TCCAGAAGCT

AT5G51090.1

Model type
Protein coding
Computational Description
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51100.1

Model type
Protein coding
Short Description
Fe superoxide dismutase 2
Curator Summary
Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.
Computational Description
Fe superoxide dismutase 2 (FSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to UV; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 1 (TAIR:AT4G25100.5); Has 11522 Blast hits to 11521 proteins in 3361 species: Archae - 194; Bacteria - 8106; Metazoa - 433; Fungi - 799; Plants - 399; Viruses - 1; Other Eukaryotes - 1590 (source: NCBI BLink).
Link
InterPro Scan - TAIR