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11-6665-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stems::pale green)
vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24236258 [Map]; Strand: w
      • AT1G65260.1 - [+] show detail - plastid transcriptionally active 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6665-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCGAGACCAC AAACATCCTC CAATAAGCCA 
    AAAGAAGACG AGAGAAGGAG AAGAGTCGAA ATCGCCATTG AAATGGCTCT 
    CAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24236247 [Map]; Strand: w
      • AT1G65260.1 - [+] show detail - plastid transcriptionally active 4
        Distance: -11; Region: promoter
    Flanking Genome Sequence: 11-6665-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAC 
    TCGGATGTTG TTCCCATTTT TCTTTCTCTA TCCTACGTCG TTTTGGTCGA 
    TGAATAACAT TGATTTTTTC ATAAAACATA TTTTATTGGA ATTGAAAACG 
    GAAATTACTC AAAGCTGAAG ATCAGAACTC TTGAAAAGAC AAAGCNTGAC 
    AATGAAGATC ATAATTCACT GATATTCTTT GATTCTTAAT ATGCAAGATA 
    CAGCTCCAAG AGAAGTTTAC CGTCATGAAT GTTTCACTTT AGTATAGATG 
    TGAATGTCCA AATCCACCAA ACAATCATGG AGTTCACAGT TCAATATTGA 
    TTGCATTGTT CATATGTAGT TGCTGGAATT TGCAAACTTA CGTCAATGAA 
    CCATGTTTCC CAACTCACAA TGTAAACTTT AGAATTGTTA TTGACTTGGG 
    AGACTTTCCC TTATAATACA CGAGTAGATA TCTCTTGAAT TAACAAACAC 
    AGACGCATCC ATCAAAATCC AAACACACAT ACACAGACTC TAAGGGACAA 
    TATAATGAAT CAAAAGTAAC GTAGCACTAT TTATAAATAC AACAACAAAA 
    ATGAAACTTG ATAATGTTTT AATACAAACA AGAATCGAAG TTATTTTCAG 
    CACATTGTTC GATTTTTTTC CTGAAAAAAC GAAACCAGCT CAACATAACC 
    CATTGAACAT TTCATGAAAT ACCTGGCAGG CAATACTTGG TAGCAGTGTC 
    TAATTTGAGA NGACC

AT1G65260.1

Model type
Protein coding
Short Description
plastid transcriptionally active 4
Curator Summary
Encodes a protein required for thylakoid membrane formation.
Computational Description
plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
Link
InterPro Scan - TAIR