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11-6665-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)

seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)

stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stems::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24236258 [Map]; Strand: w
      • AT1G65260.1 - [+] show detail - plastid transcriptionally active 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6665-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCGAGACCAC AAACATCCTC CAATAAGCCA
    AAAGAAGACG AGAGAAGGAG AAGAGTCGAA ATCGCCATTG AAATGGCTCT
    CAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24236247 [Map]; Strand: w
      • AT1G65260.1 - [+] show detail - plastid transcriptionally active 4
        Distance: -11; Region: promoter
    Flanking Genome Sequence: 11-6665-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAC 
    TCGGATGTTG TTCCCATTTT TCTTTCTCTA TCCTACGTCG TTTTGGTCGA
    TGAATAACAT TGATTTTTTC ATAAAACATA TTTTATTGGA ATTGAAAACG
    GAAATTACTC AAAGCTGAAG ATCAGAACTC TTGAAAAGAC AAAGCNTGAC
    AATGAAGATC ATAATTCACT GATATTCTTT GATTCTTAAT ATGCAAGATA
    CAGCTCCAAG AGAAGTTTAC CGTCATGAAT GTTTCACTTT AGTATAGATG
    TGAATGTCCA AATCCACCAA ACAATCATGG AGTTCACAGT TCAATATTGA
    TTGCATTGTT CATATGTAGT TGCTGGAATT TGCAAACTTA CGTCAATGAA
    CCATGTTTCC CAACTCACAA TGTAAACTTT AGAATTGTTA TTGACTTGGG
    AGACTTTCCC TTATAATACA CGAGTAGATA TCTCTTGAAT TAACAAACAC
    AGACGCATCC ATCAAAATCC AAACACACAT ACACAGACTC TAAGGGACAA
    TATAATGAAT CAAAAGTAAC GTAGCACTAT TTATAAATAC AACAACAAAA
    ATGAAACTTG ATAATGTTTT AATACAAACA AGAATCGAAG TTATTTTCAG
    CACATTGTTC GATTTTTTTC CTGAAAAAAC GAAACCAGCT CAACATAACC
    CATTGAACAT TTCATGAAAT ACCTGGCAGG CAATACTTGG TAGCAGTGTC
    TAATTTGAGA NGACC

AT1G65260.1

Model type
Protein coding
Short Description
plastid transcriptionally active 4
Curator Summary
Encodes a protein required for thylakoid membrane formation.
Computational Description
plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
Link
InterPro Scan - TAIR