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11-6700-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13172413 [Map]; Strand: w
      • AT4G25940.1 - [+] show detail - ENTH/ANTH/VHS superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-6700-1 - 5-prime edge 
    GTTGCACTAC CGATGTCGCC GAGAATATTC CTGGATAGAA TGATAAAAAC 
    TCTCATAAAG ATCGTATCCA AATTCAAGTG TTTGGGGGAA TAAGTTAAGA 
    AACTTACTAC GAATGTGACG TTCTTTGGGA GCAGATTCTA CGTGATTTGT 
    GGCCTTTACG ATCGCAACAT CCAAATCCTA TATATCTCGA TTTCATATAC 
    ATTTTATTAG TCATTTACAG ATTTTTTTTG TTACCAAAAA ATTTGAAAGT 
    TTCAGAATGT AATCCTGACC TTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13172297 [Map]; Strand: w
      • AT4G25940.1 - [+] show detail - ENTH/ANTH/VHS superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-6700-1 - 3-prime edge 
    AGTGCAACCA CGAGCAGATG TTGCTTACTG CATTCACGCA TTAGCCAAAA 
    GATTGTCAAA AACTCGCAAT TGGGTTGTGA GTTCTATGTA ACTTAAAAGA 
    TTCTTTTTTT TTTCAATTNA CAAAACTNTG TTTTNGGGGT NGCTTAAATN 
    GGGTTTCCAA CNCNCAGGTN GCNATCAAGG GGTTAATAGN CATTCATAGA 
    ACACTAANAN AAGGNGATCC ANCATTTANA GAANAGCTTC TNAATTNCTC 
    ACATAGNGGA CNTNTCCTTC GAATNTCAAA CTTCAAAGAC NATNCAAGTC 
    CTNTNGGTAA ATAGCCTATT ATNTATCCTT NGTTNCATAG CTTTTTATGN 
    GTTAATGAAA ATNGTTTTAA AACATTTNCT NGNATTGACT TGTTNGTTGC 
    AGCTNGGGAT TGCTNTGCGN GGATTAGGAC ATACCCCCTT TTCCTCGAGG 
    AGCGGCTTGA ATGCTATCGG GTTTTGAAGT NTGACATANA AGCAGAACGT 
    TTACCAAAAG GTTCAGGNGC ATCTNCAAAG GTTTGTTCTC AAATTCGTTC 
    TCACCTTTTA AACAAACCCA AGAATCTAAT TTTATCATCA TAAATCATTN 
    TTACAGAACG TNGATTTCAA TGCTTTCTCA AACCGTNTAA AACAAGGATG 
    CTTTCCGATG AAAAATTGCT AAAGCAGTTA CCCTGCTTTT GCAACAGCCG 
    GNTTTTTAGG CTTNTTGGGT GGCANGN

AT4G25940.1

Model type
Protein coding
Short Description
ENTH/ANTH/VHS superfamily protein
Computational Description
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G57200.1); Has 8063 Blast hits to 4237 proteins in 339 species: Archae - 25; Bacteria - 270; Metazoa - 3478; Fungi - 641; Plants - 597; Viruses - 312; Other Eukaryotes - 2740 (source: NCBI BLink).
Link
InterPro Scan - TAIR