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11-6802-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153841 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron5 (CDS)
      • AT4G00355.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -864; Region: promoter
      • AT4G00355.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -880; Region: promoter
      • AT4G00355.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -880; Region: promoter
    Flanking Genome Sequence: 11-6802-1 - 5-prime edge 
    TGTGGGACTA GTCTTCAGAC TCTCATACTT TTGTACATGA TCTACATAAC 
    CAATTGGAAC AAAGAGGTAC CCCCACTCAT TTCAGGTTTT ATAATCAAAT 
    CTTTCACACA AATTGAAGTA AAATGATTCA CTATCTTAAT TTATTAGGTG 
    GAACAAGCTT CGGAGAGAAT GAAACAATGG GGAGCTGGAT ATGAGAAATT 
    AGAAAAAATA GCAACTTAAA TTAATTTTGG GGGAAAAAAT TATATATACA 
    CTTCACTTTA TCTTATGTTA TACAGCAATA TATTTTTCAT TGTATATATC 
    AATTTTTTTT GTAATACCAA ATTGTATATA TCATCAAAAT ATAATTTATC 
    ATACATTTGT AAATTTTTAA TCTTATCAAA ATGATGATTT AAATCTACTA 
    ATTCGACCTT ATTCAATCAT TTCATTATTT TTACCTACTA CGGCCGGTTG 
    TCAGGAATAA ATTAGGCCGG ACAAAAAACC AGAATCGGTT ATCCGAATCG 
    AAATCAACCC AAAAAATTGG ATCCGAAATC AAACTCGAAC CCGAAGATTT 
    ATCCTATTAG GTCTTAAATT CTTCTACCGA AAAAACCGAA CCCGAATCCG 
    AAAATACTCA AATATTTTAT TCAAAAATCT AAATTTTACC TGAAACTCAA 
    AATTTTACCC GAAAATCCGG ATATTTACCC AAAAATCTGG ATATTTACCC 
    AAAAATTCGG ATNTCGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153725 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron4 (CDS)
      • AT4G00355.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -980; Region: promoter
      • AT4G00355.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -996; Region: promoter
      • AT4G00355.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -996; Region: promoter
    Flanking Genome Sequence: 11-6802-1 - 3-prime edge 
    GTCCCACATA TCATACCAAT CCATATCCCC TGAAAAACCA CATAAAGCAA 
    TTTCATCAAC TTAAACCAAA ATAATTAGAC CGGAGGCTAT GTGGCTTTAC 
    CTGTACGCCA AGGCTTGTTT TATAACCTAA CAAAAACCCT AGAGGTAATC 
    CAAAAGCGTA GTAACAAAAC AAGTTTATAT AAGCCACCGG TGCTTGCCAT 
    CCTCCTCCTA CTGCAACTCC TGATATAACT GGTTGTAAAC TGTTGAGAAT 
    CATCGTTATA CCGAGCAGGT ACGCAAGATC AGCTACCGCC TTTCTCATCT 
    CTTCACTCTC CGTAAAAACC ACAGCAAAGT CATCTCTTGT TATGAGAATT 
    ACAATTGCAC ACACTACTCC AATGACGAGA GACTCTATCA CCGTTACGAT 
    CACCGAGTAT TTCGCAGCTC GTGGATGTCC CGATCCTAGC TCATTCGACA 
    CCCTAACACT GAAAGAAACA TCTCGCATAT ATATATAAGT CTAATTAACG 
    CCTTCTTTTA GAAGACACAA AGATTGCTTT CGCTTTTTAC CTTATAGCTG 
    CATTGATTCC TATGAACAAC ATTCCTTCCC ATCCATTAAT GTTCATACTG 
    AGAGAAACAA AAGTGTTATC AGTTATCAGA AAAAGAATGT AAATCTTTGA 
    GTTTGTGAAG GGTTTTAACG GNTAACCAGA TTGAGAGAGA TCCAACGGCT 
    ATGACAGGGT CTTCAAGATG TCCAGTT

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.4

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR