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11-6886-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23898596 [Map]; Strand: c
      • AT1G64380.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -6423; Region: intergenic
      • AT1G64385.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1439; Region: intergenic
    Flanking Genome Sequence: 11-6886-1 - 5-prime edge 
    GTGTGAAATG TTAAAACCAG TTTCTTTTTG GAGATGAGAG TTATTATTAT 
    ACAGATATAT TGGATATTCC TTATAAGAAT TAAATGGAAA CAATATTAAA 
    AAGAAAATCA TCTAAAACAA GTATTCGTCA AATTCAAACT AACTAGTGTA 
    TATGTGTTTT CTCAATTAAA CTTTTTCAAT GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23898712 [Map]; Strand: c
      • AT1G64380.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -6539; Region: intergenic
      • AT1G64385.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1323; Region: intergenic
    Flanking Genome Sequence: 11-6886-1 - 3-prime edge 
    TTTCACACAA CATCCTTATG AAATGTCGAC AAGATCGTGT TTTGAATGAG 
    AATT

AT1G64380.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5953 Blast hits to 5757 proteins in 257 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 5926; Viruses - 6; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64385.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR