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11-6904-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19395902 [Map]; Strand: c
      • AT2G47240.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: intron10 (CDS)
      • AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 11-6904-1 - 3-prime edge 
    AGTATGTTAA CCTCTCTTCT TCTTTTTTTT GATGGAGTAT GGATAAAGAA 
    TCTAAGAGAA TTGATGTATT GATTTATGTA GAATTTGAAC GTGTTACGTG 
    ACGATATTCA AGAACTGAAA CCGACTTATC TAGCCTGGAG TACCAAGAGT 
    GTTTGAGAGA ATCCATGAGG GGATTCAAAA GGCTCTTCAA GAACTTAACC 
    CAAGAAGGAG ATTCATCTTC AATGCTCTCT ACAAACAGTA AGTAACTTTT 
    CATCGTTTTT GCTCTGTTTT CTTCTAACTT TTCTGTTTTC TAATAGCTTA 
    ACCTTGCAAA ACAAAATGAT GATGTAGCAA GCT

AT2G47240.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description
LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 55133 Blast hits to 51773 proteins in 3295 species: Archae - 1024; Bacteria - 35525; Metazoa - 2495; Fungi - 1959; Plants - 1853; Viruses - 1; Other Eukaryotes - 12276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47240.2

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description
LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR