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11-6924-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26770528 [Map]; Strand: c
      • AT5G67070.1 - [+] show detail - ralf-like 34
        Distance: 1682; Region: intergenic
      • AT5G67080.1 - [+] show detail - mitogen-activated protein kinase kinase kinase 19
        Distance: -2198; Region: intergenic
    Flanking Genome Sequence: 11-6924-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGTATTT 
    TCCCATCCTA CTTTCATCCA CATGGACGTG ATCCCTAGCC ATTAGATTGG
    GTGGAGTTGC GATCTCTACG AGCATGTCTA CTACAACTTG CTTTAGCTAT
    TAAATAAAGA ATCTTTATTA ACTTAAATGA TTTTTATTTT TTTGTATATA
    TACTATTGGA AACGCAGAGA AATGTGAATG TAAAATGGAT ATGATGAACC
    AACACCGTCC AGGCGACTTG GATGATTCAC TGAATCCGAG GAAAAAGAGC
    AGGCGACTTG CGAATGCTAT CCTATTTTTT TTGTAGCTTA TTATACTATT
    ATTATTGTAA ATTGGGAAAT AAATTTCTGG CAGCCCACAG TTTATTTCTT
    GGAGATTTCC ACCAATAATT TTTTTATTTT TTTTNATTTT TTGGGGTTNA
    TCAGCCCTNT TAACAACTAC TTAATTTTAT GNGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26141126 [Map]; Strand: w
      • AT5G65410.1 - [+] show detail - homeobox protein 25
        Distance: 3943; Region: intergenic
      • AT5G65420.1 - [+] show detail - CYCLIN D4;1
        Distance: 344; Region: intergenic
    Flanking Genome Sequence: 11-6924-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TTATCAACAA AACTCCAAAA TCCCAATATT TTATTGAAAA CTTTTTAACA
    AAAAATAAAT AAAATGATTG GACTCCAGGT CCACTAAACC TCTAGGATCT
    GTAACTATGA AGAAAATGGG CCAATGCTAT ATTCATTAAA TTTAATCATT
    TGGGTCTACC ATTGTCGCAT GGCATACTAG CAATTTGATG ATCCTGAAAT
    AAAATAATTG TGCGTGGAGA TAATTTATGA AGATTTCCCC TTTTTGTATC
    ATTTTTTAAA TAGACATTTT TAATCTGAAA AGGTTAAAAA AAAGTCTCTA
    TACATCATTA AACAAGTCGG TCTAATCTTG TGAAATAGTT GTGTAAGAAA
    AAAACTTAAA TATTATGTAT TAACAAATGC TAGTTGGTAT ATATTTTCTT
    TAAAATAATT ACAATTTTAA CTCATAACAT TTGTTGTATT CAGTTATTTT
    CTATATGTCT CAATAATCAA TAAAATAAAT AATGTTAGTA ATAACCATCA
    TGTAATTGGT GAATGTGAAA GATCATCTGT CATTGAAAAC TTTGTGAATA
    TGATTTTATC ACTGCATATA CTANACTTTT AAATTTATTT AGCTTTTCAC
    TAATTATATT AATGGNGGTC AATTTTAGGA TCACCANCCC GGGCCGTNGA
    CCACCNGGNC CCNNTNA

AT5G65410.1

Model type
Protein coding
Short Description
homeobox protein 25
Curator Summary
Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.
Computational Description
homeobox protein 25 (HB25); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Zinc finger, C2H2-type (InterPro:IPR007087), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 22 (TAIR:AT4G24660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65420.1

Model type
Protein coding
Short Description
CYCLIN D4;1
Curator Summary
Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.
Computational Description
CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67070.1

Model type
Protein coding
Short Description
ralf-like 34
Curator Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
ralf-like 34 (RALFL34); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67080.1

Model type
Protein coding
Short Description
mitogen-activated protein kinase kinase kinase 19
Curator Summary
member of MEKK subfamily
Computational Description
mitogen-activated protein kinase kinase kinase 19 (MAPKKK19); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 20 (TAIR:AT3G50310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR