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11-6941-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15940107 [Map]; Strand: w
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: 2491; Region: intergenic
      • AT2G38090.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -4604; Region: intergenic
    Flanking Genome Sequence: 11-6941-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACAG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATAG TATCACATAC TTGAAACGTA AAATATGGGT 
    TCCAACTTAT AATTATATAA AGTCTATATT ATAAAAAGTA ATAAAAACTT 
    AAAAAGAAAC AAATGATTTG TGCAAAGCCA CCTAATGTAC AAAGCGTGTG 
    GAGCNGCATT ATGAGTGGGA GCCCTACAGG CACGCTCGCA TTCTTTTGCT 
    GTCGCTCCGG TGGGTCAAAC TGTTTGCCAG AGCTTCCTAT TTACTCTCAA 
    CGTCGTGTCG TTTTTGTGTT GCCTCTCATA TATATGATAT TTATTTTAAT 
    CCTATTACTT TATAATATGA AACAAACCTC AATTGTTTTG CTGTCACAAA 
    TAGTACCCAC TTTCTGAATG ACCGTACCGA ATTTTTATTA CATATACACT 
    TTTTTTTTTT TTTNGAAAAN NNANNACNCN TTTTTNNANA ANGAAAAAAN 
    TNNCNCCCCN TAAAAANNNT TTTGGGAAAA ANAAANNTTT TTNNNNNNCC 
    CTTTTTAAAA NNAAAAAAAA NNAANTTTTN NNAACTTTNG AAAAANNCNN 
    GNAAAAAAAA NNNGGGGNTT TTNGGTTTTT TTTAANNNNC CTTAAAAANA 
    AAGGGGGGGT TTTTTTTTTT TAAANNGGNA AGGCNAAACC CNGNAANGNN 
    GGGNNNANAG GGGNNGGNGN TNAATANAAA AAAATTGNGN NNNGGGGNAA 
    AAAAGGGTNA ACCCNCCCAA TTTNCNNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15940101 [Map]; Strand: w
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: 2485; Region: intergenic
      • AT2G38090.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -4610; Region: intergenic
    Flanking Genome Sequence: 11-6941-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    GGGGCACCAA GCAAATAACA AGATTCTGAT AGTGTCTTTT AGTCAACGAA 
    TTTTTTTGTA GTTTAATTTG TCATTTAATT TTTACTTATT TTTATAGAAA 
    ATACATGGAA ACATCTTAAA TTTATTATAT AAACNGTAAA TGCTATTCCC 
    TATATTTATA AATGATGTAT TTTTTATAAA AATTTCTTAC AAATGCATCA 
    TTTACATATT TCTAAATGAT GTATTCGTTT AAATTTATTA GAAAATTAAA 
    AGTTAACTAT AAATGCATTT TTTTGTGATT TACAATTTTT AATAACTTAA 
    ACGAATAGTT TTCAAAAAAT TATATTAAAG TTTTAATTCA TCGATAACAC 
    TAATAAATAT TACATAAAAA CACAAATAGA TTGATATCTC GGATC

AT2G38080.1

Model type
Protein coding
Short Description
Laccase/Diphenol oxidase family protein
Curator Summary
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38090.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Link
InterPro Scan - TAIR