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11-6980-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)
stamen (PO:0009029)
  • abnormal (PATO:0000460)
    (Flowers::stamen)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20167310 [Map]; Strand: c
      • AT3G54460.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / F-box f...
        Distance: -17; Region: promoter
    Flanking Genome Sequence: 11-6980-1 - 3-prime edge 
    GTTTCGAGTC CGACCTCTGC GAAAGAAAAA GAAAATAAAT CACAATGAAA 
    TTAGTCAATG ACTAAATTAG GGTTTATGTT TTTTAAAGAA AAAACGGGAA 
    AAAAATCTTA TTTGTTATTG AC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20167265 [Map]; Strand: c
      • AT3G54460.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / F-box f...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6980-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACC ACTCGAAACA GAAGAAGAGA AAGATGAGAT 
    TTTTCTAAAG CAAATCTACA AAGCCTTATA ATTTTTTTTT CTGGCGGCGA 
    TGGCCGATGA TCACAAACTC TGTGGTTTTC TCTGTACCGT TCTTTCCGTC 
    GATTCGCCTG ATCTTCTTCA ATCGGGCTCG TCTTGTTTCA TCTTCAATGA 
    TGGTTCCGTC ACCGGTTTCA AATCCGAAAA TGGCTTGATC TTATCCCTCA 
    CTAATCCCAT CTCTAATCTC CAATCCCTAA TTTCGTCAAA AGGAGATCAT 
    GATGTTGANA ATT

AT3G54460.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
Computational Description
SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink).
Link
InterPro Scan - TAIR