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11-6986-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334307 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -830; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -425; Region: promoter
    Flanking Genome Sequence: 11-6986-1 - 5-prime edge 
    AGTTTAACTA TCCAATACTG AATATACATC CATTCGGTAC TAAATGTATA 
    GTAGATACGA ATTTCCTCCG GAATGACTCA GAGAACAGTG AGAGATTAGT 
    AGATAAGATA CTTAACTTTT GGGGAGAGAC CTCAGGACCC ATATGACTTG 
    AAGACTCACA CCAGCTCTGA AGTTAGACGG GTTTTGGGTC TCCGGGTCAA 
    GTTTAAAGAA AAAATGTTAA AGTAGATTTC CCTTTCTACT TTGGTTTGAG 
    ATGAGTTTAG AATTTAGTTC GATGTTACGA ACGTGAATAT ATACCCAAAA 
    CTTGTGATGT ATATAAATGC TTATCAATCT CGAATCTCTC TGTTACTGTA 
    GCGTGTAATC CACGTTTGAA GTTTTTGTTC GATTCGATAA ATGTTGGAGC 
    CAAAACAGAG ACATCAGCAA AAACATGGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334191 [Map]; Strand: w
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -714; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -541; Region: promoter
    Flanking Genome Sequence: 11-6986-1 - 3-prime edge 
    GTTAAACTTG TTCCTTAAGA AAAAAAGAAA TCGAGTTCAT GGACTGAGAT 
    TTGCAAACGA GGTCTTATCA TATCTTCTTG TAAAATACCC GATCGGGTTC 
    TGTTCTCAAA TAATTTCAGG TATCAGGTAT TACATGAACC GAAATTGATA 
    TCCGTGAGTA TTTTTTATTA CCCGAACATA TATATACATA TGAGGACATA 
    TATACTGATA ACTTGAGTTT GTGAATTGTT TAATGATTGG ATTATGGAAC 
    AAGTTAAAAA AAAGGTTTAC TNCTTGTTTT TTATTATTGT CATAAATGAA 
    AACTTCTTAT AATTTTATGG ATAGTTTTAT ATATGTTTGG GTATATCTGG 
    ACAAGGTTTG GGTAAATAAT ATTGANACCC AAAATAATNT GNGGTTATTT 
    ATTGGGTNCT TNAACCTATA CCNGAANAAG AACCTATAGC TNANNTNATN 
    CGTTTAATTC GAACCAAGTC CTTANANNTT TTAANTCCGA NCCCGNAAAN 
    GACTCGATCN AAANCCCGAN CNNGAATACC NAANATATCC TNANNTTNNN 
    ACTAAAGANA NTNTGGAANT NGCTCNCCTT NTNGTNAGAA ANANANANAC 
    NTTGGGGGGN TNNNTTNNNN CNNNNNCAAN NGNNNNAGGG GTTNNGGAGA 
    NNNANTNNNT TNACCCCTNA GNNTGTTNNN NNAANGTANN GAGANNTTGC 
    GAAACAGTGN GGNAGNANTA NTNGCNAGTN ANCNGTGCCG NNACGAAAN

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR