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11-7007-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9545952 [Map]; Strand: c
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -1485; Region: intergenic
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 391; Region: intergenic
    Flanking Genome Sequence: 11-7007-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TAGTATTTAT TATTTCAGGA AATGCGGAAG CCTTAGAGAA GTAGATACAA 
    AGATGTAAGA ACAGAGTACC ATGCTCTAGA GTTGGAGACT TAAAAAGGCA 
    CTAGCGACGA AGAGCTTGAT GAGCCTGATG ACCCTGATGA CCTATAAAAG 
    AAGAAAGAAC AGAGTCAAAG AGTCAACATT ATGACTAAAT GTTGAGAGTC 
    TTTAAAGTAT ATATATAGAG AGTCTCTAAT TCTGTGAGAG ATTGATTATC 
    TAATCAGTGA ATTGGTGTGT TTCAGAGCCT GAAACTCTGC AGTTCTCTTC 
    ATTGTAATTC AGGTTATTTG ATAGATCAAT AAAGATTGCT TGTCTTGTTA 
    TGCTGCAACA AAACAAAACA GAATAGTAAG ATGTTTCAGT TACCATGAGG 
    CCTCAGAATC TTCGTCCCTT TCCGCGATGG GAATTTCTTT AGCCTGCTGC 
    TTAGTTATCA TGGAATTAAC AGAGAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9508052 [Map]; Strand: c
      • AT4G16892.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-7007-1 - 5-prime edge 
    ATAAATACAT GTTTTGAATT TGTGAGCTTA GGGTTTGCAG ACTTAAATTA 
    GTCCTGAATT TTCTAAAACA CACATACATT GCAAATGTTT TTTTTAAGCA 
    ATTAATAAAT CAGAATTTGG ATCAACAAAA AATTTANAAC NTTGTGCCGT 
    GAGAGTTGAC CTTCTAACCA AGGGCAAGGA TTGGTATCCA TTCTTGGAGG 
    CAAACGTTGC CTTCAATGGC ACACAGTATT GGAGATCAAT TTATAAAATT 
    GAAGAACGGC AGTTGTGTAA GAGGAATGCT TATCTGTTTT CTTGTTCCTT 
    CAAATTCCAG CATGCAAATC TTCCATCTGA ATCGGCTTTC AATGAAGTGG 
    AGTTTAAGTT TTCTTACTCC AGGAGGATTA AAGAATGTAC AACCAACAGT 
    CTGGAGGAAA AGGTGATGTT GTAGTAGCGA CATCAGGAAC ATCTGAAGAA 
    TATAACAACT TACCTTGTGG CCTAAGTGTA GCAGACTCAG GATTGACCGC 
    TCTAAATCCG GAGGTTTCGT TAGGGCAGGG AGAAGCATCA TCAGTTTCTT 
    CTTATCCATC TATGGAGGGG GAAGCT

AT4G16892.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR