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12-0028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 321234 [Map]; Strand: w
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0028-1 - 3-prime edge 
    TTTGCATAAC GATTTGCATT TCTTCGAAGC AGAGATGAGC GGATTGAGAG 
    TAGACGACAA GTTGGGAACG AGGGAGAAGA AGCTCATCGA AGACGGAAGC 
    TAATATCTTC ACTTTGCGAA TGAGGGAGAG AGAATTGCGT CGGAGAATGA 
    ATGGGAGAGG CTGCATAGAA GAAATCTCAT GAGACGCCAG AAACAGAGAC 
    CGAGTCAGTT TGGTATCTGA AGAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 321289 [Map]; Strand: w
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0028-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCN GGTANTTNGA TCGANGANNG NAGGGNNGTA 
    ACCAANCGTC GTGGATACGN CNNGCANANN GACATCGTNG CCTTNNNCTT 
    TTNATGAGCT TGTCNNCGAN TTATCCACCG NTNTTGATAT TTTACCGCTC 
    CATGACTTTG ACCTCAGCGA CGACGCCCAA GATCTCATCT CTCTCCTTAC 
    AAAACAATGC TCCGATTCTG TTCAGTTCGT CGACGCCCGC GACGTTGCTC 
    TCCGTCGTAA AGTCACCGAT ACAATCGCCG GGATCAAGCA CCAGATCTCA 
    CCGGATCACT CTACTCTCAT CAAGATTTTC AACGACCTTG GTTTATCCGA 
    TTCTGCTAGT TTGACCGACG AAATTCAGAG ATTGGAAGAC GAGATTCAGG 
    ATCAGATCGA CGACAGATCC AAATCCGCAG CCGCCTCTCT TATCGGACTC 
    GTCCGTTACT CTAAGTGCGT CTTATACGGT CCCTCCACGC CGGCTCCAGA 
    TTTCCGCCGC CACCAATCCT TATCTGACGC TAACATCCCC GCGGATTTCC 
    GGTGTCCGAT CACGCTCGAG CTGATGCGGG ATC

AT5G01830.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR