1. Home
  2. Mutant Lines
  3. 12-0047-1

12-0047-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1561398 [Map]; Strand: w
      • AT4G03510.2 - [+] show detail - RING membrane-anchor 1
        Distance: -2022; Region: intergenic
      • AT4G03520.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 961; Region: intergenic
    Flanking Genome Sequence: 12-0047-1 - 5-prime edge 
    CGTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TACGGTACGA AGCTGTCCGA TATTGACTTG 
    CCTTTGTTTC GATATTTCAC ACTTGTTCTA ATTTTGATCA TTATGCTCAT 
    GTTCCATTTT TGAATGTCGT CCTGACTTCT TAGGTCGCGA AAGTTGATAC 
    AAACCAAAGG ACACGAGAAG ACCATTTACA AAGTCCAAAT CATAATATTA 
    TAATGAAAGT TGATACAAAC AAAAGTCACN GAAAATGCAT TTATAAAAGT 
    CCAACTGATC TATTATTATA AAACCGGATT GCATCTTTCT TTTGACCTTA 
    TCTTCAGCCC AAATATATAA TTCTCAAACC AAAGACGGCA ACCAAAAAAA 
    AAAAAAAANN TTNCCCNNNN NNGGGGGTTN NCCCAAAAAA NNTTTTTTTA 
    AAANCCNNNT TTTTTAACNT TGGNAAAANN GGGGTTTTNN TTTTTTTGGG 
    GGNAAAAAAA AAAANANCNN TTTNNNAAAT TNGGCCCGGG GGNANTTNNT 
    NAAAAAAAAT TTTTTTTTNA NNNAAAAAAN NNNTNNGGGG NNCCCCANNG 
    NNNGNGGGGG GGGNNGGGNG NCCCCAAAAA ANTTNTTNAA AANNNNNGGG 
    GGGNAAAAAA AAANNNNNNN NNTNNCCNNC NNNNNNNNNG GGGGNGNGNN 
    NNNTNTNNNN NCAAAAAAAA ANNNGGGGNN NNNTTTTGGN GTTTNCCCNN 
    NNNNNNGGGG GNGGGGGNNA NANAANNNNT TTTTTNNNNN GGGGGGNNAA 
    AAAANCCCCN GGNNCNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1561407 [Map]; Strand: w
      • AT4G03510.2 - [+] show detail - RING membrane-anchor 1
        Distance: -2031; Region: intergenic
      • AT4G03520.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 952; Region: intergenic
    Flanking Genome Sequence: 12-0047-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTTCGTACG TGAAACCTAA CCCCCACTTG AGGTTCTTAA TGTTTTAAAA 
    TAAACAAGCG GACAATGTTT TAATCATTTG ACCTTCATGA GTGTCGGCCA 
    TATTCTCCTA CCAAACATGC TGCAGCTTGA TTAGATAAAT GATAAAACAA 
    TAAAACGATA GTTATGTTTT ATTCATGTTC TCCGATCCTG ATATAATTGC 
    TATGATAGTC AATTTTGTTA GAATAAAGAT GAAAATACTT GAAGCT

AT4G03510.2

Model type
Protein coding
Short Description
RING membrane-anchor 1
Curator Summary
RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.
Computational Description
RING membrane-anchor 1 (RMA1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 2 (TAIR:AT4G28270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03520.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
chloroplast localized thioredoxin, similar to prokaryotic types.
Computational Description
ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 20603 Blast hits to 19509 proteins in 2977 species: Archae - 276; Bacteria - 10688; Metazoa - 2669; Fungi - 1127; Plants - 1883; Viruses - 7; Other Eukaryotes - 3953 (source: NCBI BLink).
Link
InterPro Scan - TAIR