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12-0073-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054740 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1966; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6235; Region: intergenic
    2. Chromosome: 4; Position: 3055238 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2464; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5737; Region: intergenic
    3. Chromosome: 4; Position: 3057199 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4425; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3776; Region: intergenic
    4. Chromosome: 4; Position: 3057697 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4923; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3278; Region: intergenic
    5. Chromosome: 4; Position: 3058693 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5919; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2282; Region: intergenic
    6. Chromosome: 4; Position: 3059191 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6417; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1784; Region: intergenic
    7. Chromosome: 4; Position: 3059689 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6915; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1286; Region: intergenic
    8. Chromosome: 4; Position: 3060187 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7413; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 788; Region: intergenic
    9. Chromosome: 4; Position: 3060685 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7911; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 290; Region: intergenic
    10. Chromosome: 5; Position: 11185837 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1323; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4706; Region: intergenic
    11. Chromosome: 5; Position: 11186339 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1825; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4204; Region: intergenic
    12. Chromosome: 5; Position: 12824310 [Map]; Strand: w
      • AT5G34358.1 - [+] show detail - transposable element gene
        Distance: 21462; Region: intergenic
      • AT5G34376.1 - [+] show detail - transposable element gene
        Distance: 13528; Region: intergenic
    13. Chromosome: 5; Position: 12867029 [Map]; Strand: w
      • AT5G34412.1 - [+] show detail - transposable element gene
        Distance: -25192; Region: intergenic
      • AT5G34431.1 - [+] show detail - transposable element gene
        Distance: -21165; Region: intergenic
    Flanking Genome Sequence: 12-0073-1 - 5-prime edge 
    ACGAGGACTT CCCGGGAGGT CACCCATCCT AGTACTACTC TCGCCCAAGC 
    ACGCTTAACT GCGGAGTTCT GATGGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184897 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -383; Region: promoter
    2. Chromosome: 5; Position: 11185901 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1387; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4642; Region: intergenic
    3. Chromosome: 5; Position: 11186403 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1889; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4140; Region: intergenic
    4. Chromosome: 5; Position: 11186906 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2392; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3637; Region: intergenic
    5. Chromosome: 5; Position: 11187408 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2894; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3135; Region: intergenic
    6. Chromosome: 5; Position: 11188414 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3900; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2129; Region: intergenic
    Flanking Genome Sequence: 12-0073-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAGTCCTCGT GTTGCATCCC TCTTTTATGT TTAACCTTTT TTTTTTGGGT 
    NAAAACTANN NNACNCCNNA ANTTTAAAAC CGGNNGGCCA AACTGGGNNT 
    TNNANNCCTT TTGGNAANNC CNAAAAANAN CCCNCCNACA AAANAANCGG 
    GANAANNAAA TTTTNCCNTN GNCTTTTNGN NANCCCCAAA TTTNNNCCTT 
    NAANNNCTTT TTGGGGCNTT TNNGGNATTG GGGNTNTTTT ACGNNCCCAA 
    ANTTNCTNGT NNAANCATGG TTTNCAAATT TTTTNNNGCN TNAAAGCNGG 
    TNAAAANNAA ANGGGGGNNC CCNNCNNAGG GGGGGGGNCC CNCGGGAAAG 
    GGNTNNNAAN GNTTTNAAAA AAAAATTTTT NCNATGGCTN GGGTTTTNTT 
    AANGGGGGGN ANNTTNCNAC CCCCNNNGGN GCCGGGNTTN CNNNCNCAAA 
    GGCCNGNNAN AACNCNGNGG NGNNAAAAAA NNGNNNNAAN NAGGGGGGAN 
    AGCNNNACGG NAAGNCGCCN NGNGAANCCC NANNGNNGGG GANAGAANGG 
    GAGNNANGAA NGAAANNNTA NGNCGGNAGG GNNGCANGAG GNGGGGGGAA 
    GNANGAAAAA NGNACAAGAN TANGCGNNNN NGCGNNAAAN GNNNANAAAN 
    GAANAGNGAG CAGGGCGNCC NNTNTCTANC GAGACGATNA NNAANNNNNN 
    GNNGTAAGGA CGNGGANNGN ANAACNNAGN ANANTAAANA NANAAAN

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G34358.1

Model type
Transposable element gene
Short Description
transposable element gene
Link
InterPro Scan - TAIR

AT5G34376.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.4e-31 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G34412.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 8.7e-05 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT5G34431.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR