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Mutant Lines
12-0133-1

12-0133-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 22683653 [Map]; Strand: w
- AT1G61480.1 - [+] show detail - S-locus lectin protein kinase family protein
  Distance: 0; Region: exon1 (CDS)

GATACAAACG GGTCAGGATC CTTCACTTAT TTTGAAAGAA ACTTCAAACT 
TTCATATATA ATGATAACAT CAGAAGGCTC ACTGAAGATT TTTCAGCATA 
ATGGAATGGA CTGGGAATTA AACTTCGAGG CTCCAGAAAA TTCATGCGAC 
ATTTACNGGC TTTTGTGGAC CTTTTGGAAT TTGTGTTATG TCAGTACCTC 
CAAAGTGTAA ATGCTTCAAA GGGTTTGTAC CAAAATCCAT TGAGGAGTGG 
AAAAGAGGAA ACTGGACTGA TGGTTGTGTG AGGCATACTG AACTACATTG 
CCAAGGAAAC ACTAATGGTA AAACTGTAAA CGGCTTCTAT CACGTTGCCA 
ACATAAAGCC TCCAGACTTT TACGAATTTG CAAGTTTTGT GGATGCTGAA 
GGATGCTACC AAATTTGCCT CCACAATTGT TCTTGCTTGG CCTTTGCTTA 
TATCAATGGA ATAGGTTGCT TAATGTGGAA CCAAGACCTA ATGGACGCAG 
TGCAATTTTC TGCAGGGGGA GAAATTCTTT CCATTCGCCT TGCAAGTTCT 
GAACTAGGTA TTGCTTAAAA CATAACACGA AAGAGAGACT TCGCCATTAC 
AACTTTATCT TCCACTCCAT TGGTACTGTT CTCTAACTTT TTTTCGTTTT 
ATATATCTCA GGTGGAAATA AGCCCAACAA AATCATTGTT GCTAGTATTG 
GGAGCCTTTT CTCTTTTTGT GATACTGGCT TT

5 prime edge [+] show sequence

Chromosome: 1; Position: 8315366 [Map]; Strand: c
- AT1G23400.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
  Distance: -622; Region: promoter
- AT1G23410.1 - [+] show detail - Ribosomal protein S27a / Ubiquitin family protein
  Distance: 0; Region: exon1 (CDS)

TTTGTATCTT GCTGAAGGCT GAATGGCTTC ATGTCCGGGA AATCTACATG 
GATCAGCAAT GAGTATGATG GTCAATATGG AGAAAAAGAA AGAGTAATTA 
CCAATTTTTT TTCAATTCAA AAATGTAGAT GTCCGCAGCG TTATTATAAA 
ATGAAAGTAC ATTTTGATAA AACGACAAAT TACGATCCGT CGTATTTATA 
GGCGAAAGCA ATAAACAAAT TATTCTAATT CGGAAATCTT TATTTCGACG 
TGTCTACATT CACGTCCAAA TGGGGGCTTA GATGANAAAC TTCACGATCG 
CCTCGACTCT TTCTGGATGT TGTAATCAGC TAGTGTTCTT CCATCTTCCA 
ATTGTTTTCC GGCGAANATC AACCGTTGCT GATCCGGTGG GATTCCTTCC 
TTGTCTTGGA TCTTCGCTTT CACATTGTCG ATNGTGTCTG ATGATTCTAC 
CTCTAAGGTT ATTGTCTTCC CCGTTAGGGT TTTCACGAAN ATC

AT1G23400.1

Model type: Protein coding
Short Description: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator Summary: Promotes the splicing of chloroplast group II introns.
Computational Description: CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23410.1

Model type: Protein coding
Short Description: Ribosomal protein S27a / Ubiquitin family protein
Computational Description: Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G61480.1

Model type: Protein coding
Short Description: S-locus lectin protein kinase family protein
Computational Description: S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61490.1); Has 125416 Blast hits to 123463 proteins in 4497 species: Archae - 122; Bacteria - 13868; Metazoa - 46115; Fungi - 10812; Plants - 35535; Viruses - 455; Other Eukaryotes - 18509 (source: NCBI BLink).
Link: InterPro Scan - TAIR