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12-0181-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22186136 [Map]; Strand: w
      • AT1G60150.1 - [+] show detail - transposable element gene
        Distance: -2993; Region: intergenic
      • AT1G60160.1 - [+] show detail - Potassium transporter family protein
        Distance: 1978; Region: intergenic
    Flanking Genome Sequence: 12-0181-1 - 5-prime edge 
    CCGATAGGTA TGGAATTCGG ATCGGATTTT TGGATTTGAA GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15971271 [Map]; Strand: w
      • AT5G39880.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0181-1 - 3-prime edge 
    CCTATCGGTC CCCAAAAAAG GATGATTGAT CAAAAATAGT AATCTTACAC 
    CAACACACAA CCCACAGTTT AAAAAATAAA ATAAAAAATA GACATGATAT 
    TAGTTTTGTC GAGGTATGTC ACGTAGCCTT TGCACATTGT GAACATTGCC 
    TTGAACTCAG GGGTTTTCGG GGCAGACCGC TCTTTTCGGT TTAGGATCTC 
    AGTGATTTCG GTAAAAGGTA AGGTCTGGAG TTCGGATACT GTTTTTGGAC 
    ATGCTGATTT TCTCGGTGTC ACGGGAGGAG CGTGACCGGA AACGGAAAGG 
    AACACTGAGC CGAGGGCTAA AACAAAGGCT ATGAGACCAA CAGANAGATC 
    CTTGCCTTGG TTGTATTGCT TTGGCAAGGC AAAATTGTAA AAAAACATNC 
    CTAAAGNAAA AATCCNTNCN ANGGAGGGCC TTTTGATTNN NANTCNCANC 
    CCGGGCCGGN ACNCCNGGCC NTTT

AT1G60150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 28% identity and 3.6e-07 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT1G60160.1

Model type
Protein coding
Short Description
Potassium transporter family protein
Computational Description
Potassium transporter family protein; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake permease 7 (TAIR:AT5G09400.1); Has 3447 Blast hits to 3411 proteins in 1044 species: Archae - 13; Bacteria - 2434; Metazoa - 1; Fungi - 101; Plants - 776; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G39880.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28750.1); Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR