1. Home
  2. Mutant Lines
  3. 12-0193-1

12-0193-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26865076 [Map]; Strand: c
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-0193-1 - 3-prime edge 
    CCTCAAATAA ACGAGGTTTG ATTTTGTTTT TCTTACTAAT TTATAAACTC 
    ATGTTGTTGT TTTGGTAAGT GAAGGTACAT ATGGAGGTGT CTTGGTTAAG 
    AGTTCTTCTA GATAACATCT CCTCCTATCT AAGTTTATCA TCTATGGACG 
    ATTTATCTTC AAACCCTGCT CATAAGTACT ACACCAGAGG AGAAGATATA 
    GGAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26864960 [Map]; Strand: c
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 12-0193-1 - 5-prime edge 
    ATTTGAGGGC ATAGACATTT AGAAACTTAC CATCATGTAA TGAAATAAAT 
    TCGTGAATCA ATGAAAAGTT GAGGCAAATA TACAAAACCC CTGAAACAAG 
    AACTGCAAGA ACACCAAGTA AGAACAAGTT TAGGACATTC AAAGCTAAGC 
    TGAAAATTCA ACGAATATAA TTGTAACCAA TATCATAAAG CTGAGGACAG 
    AATCTGATGC TTAGTCAACC CTCGAGTCAA CATAATAAAA CCCCAATAAA 
    AAAAACTCTG AATCGAACAA AGAAAACGAA AAAGATTCAT TGCTGAGGAA 
    ATTAAGCGAA CTCTACACAA CTTGGAATCT GCANAAACAA CTTTCTAAAA 
    ACAGAGATAT ATGGAACGAG AACAAAGCT

AT5G67340.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR