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12-0195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14193209 [Map]; Strand: c
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -21048; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 2532; Region: intergenic
    2. Chromosome: 3; Position: 14203618 [Map]; Strand: c
    3. Chromosome: 2; Position: 9647 [Map]; Strand: c
      • AT2G01021.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2975; Region: intergenic
      • AT2G01023.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1; Region: intergenic
    Flanking Genome Sequence: 12-0195-1 - 5-prime edge 
    CTCACTATGC ACCTTTGCGA GCGTNGCGGG TTTTCAAAAC ACTTGGCAGA 
    GGTCCGGAAT CTTACCAAGT AATAACATTT AACCTCGAGA GACGAGCTCG 
    TGTAAAGTTG GGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14193325 [Map]; Strand: c
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -21164; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 2416; Region: intergenic
    2. Chromosome: 3; Position: 14203734 [Map]; Strand: c
    Flanking Genome Sequence: 12-0195-1 - 3-prime edge 
    ATAGTGAGAA TAATAAGTGA AGAGACAGAC TTGTCCAAAA CGCCCACCAC 
    GAAGGTGCAT AGGGAGAAGA GTAAGTCAAG AGATAGACTT GTCCAAAACG 
    AAACGGAAGA GAAAGCT

AT2G01021.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01023.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G41345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-18 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G41762.1

Model type
Protein coding
Computational Description
unknown protein.
Link
InterPro Scan - TAIR

AT3G41979.1

Model type
Ribosomal RNA
Short Description
rRNA
Computational Description
5SrRNA
Link
InterPro Scan - TAIR

AT3G42047.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR