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12-0201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4809641 [Map]; Strand: w
      • AT3G14390.1 - [+] show detail - Pyridoxal-dependent decarboxylase family protein
        Distance: 208; Region: intergenic
      • AT3G14395.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1282; Region: intergenic
    Flanking Genome Sequence: 12-0201-1 - 5-prime edge 
    NNCGANCCTA TNAGNNNTNA NAANCNGCTN TACACTGGNA CCACGNNTAA 
    CAACTCTGGN ACCGTGAATN GNCCCATGCG GGCCATTTAA TATGTGGATG 
    GTTGCATTTT TCTTCTTCTA AGTGACTAGT TTGTACNTTG GTAAAGTGTT 
    TACGCTAACA TCCATTTGTA AGTTTGATTC AACAAATTAA CTTCAACAGT 
    GAAATGAACA TGTCTAATTT GGAAAAGTTT GATTTCAAAC TGAATATGTT 
    AAAAATTTCT CAGCATAAAT AAGATTAATA TCCAAATGTT AATTAATTAT 
    TTTATTTTCA ATTGGATGAT CATAAAACTT GCAAAATAAT TAATCAGAAA 
    AAGAAGAAGC AAATTTTTTA ATTATACTTG AACAATGAAA ACCTAAATCC 
    CTGCAATTTG GCTTTTGAAT TTAGTAAGAG ACGTTAGTGT ATGAATGTAT 
    GTATATGTCA TCTTCACGAA TTAATGCTAA AAGTTTGGCA AATCTTTGGT 
    TGGCCAACTC ATTTGGCTAT GATATGTTGT TACCATTATA TATGCATGTT 
    GCTGTCAATT TTTCTCTTTT CCAGAAGTTT ANAAAATCAT TATATAGTTA 
    TATTACAGGG TACGTATCAT ATCATACAGC CNCNTNTCAN GAGGATTAGA 
    AAAAAGGAAT CTGNGATAAT CATAGNCTTG AATTTANCAA CAAAATTGTT 
    TTAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4809528 [Map]; Strand: w
      • AT3G14390.1 - [+] show detail - Pyridoxal-dependent decarboxylase family protein
        Distance: 95; Region: intergenic
      • AT3G14395.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1395; Region: intergenic
    Flanking Genome Sequence: 12-0201-1 - 3-prime edge 
    CGTACGGTAA CATAGAAACC ACAGAAAGAA AATAAAACTT AAAGGACCAC 
    CTCTATTATA TGGCGGAGAG AGGTGGCCGC GCCAATACGG CGTCGCATGG 
    GACCATTTTG CTACTTCAAG TTTCCAGCCA CCGTCTCATT TACACATTAA 
    AAGGTTTATT TTGGAATCTT CCTTATAACC CATGATGAAA TTAGACTTGT 
    GGCGGTAAGT CACTACATGA TAAACCAAAT TCACTTTACT TGTCCTGTGA 
    ACTATGAACT ATCTTCTTTT AGTTTCTTGA TTAATGACAT AGTAGTTGTA 
    GTTATTGATT CATTTAGTTC TGCAAGCAAA CTTGTGAACA AAAAGCT

AT3G14390.1

Model type
Protein coding
Short Description
Pyridoxal-dependent decarboxylase family protein
Computational Description
Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14395.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR