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12-0222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1400543 [Map]; Strand: c
      • AT3G05030.1 - [+] show detail - sodium hydrogen exchanger 2
        Distance: -3185; Region: intergenic
      • AT3G05040.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 728; Region: intergenic
    Flanking Genome Sequence: 12-0222-1 - 3-prime edge 
    ATTTAGGCAA TGATATGGTC TTCTTACATC AAGAGACTCC AAAATAGCAA 
    AGGATTGAAA AACACTTGCC TTGTTCGACT TACAGCTGAG AATCGCTCCT 
    TAAAGGGGAA GAAAATCTGA TGGCTAACTT GGAACATCAG CTAGACAAAG 
    ACNGGATGTG TAGACAATCT ACAATGACAA GTAGACAGAT TAGAAAATGA 
    AACAGAGCCG ATTAAGAGAT AAGCAAGTAA CAGAAGCTAA ACTGAAGAAT 
    ACAAACTCGA GAAACTAAGA AAAAAAGGTT CAAAGTTTTG GAAATTGAAT 
    GAAGCAGCAC ACTTACAGTT TCTCCATCTG TCACCGTGAA CAAAGTTCAA 
    CACATACATC TAAAGCAGCG AGCTTTGCTT CTCTACTATA GAGCTAAAGG 
    TCTCAAATCC TACCAATCAT CTCAGACAGA GCGTTAGTCT TTTGGAAAGC 
    T

AT3G05030.1

Model type
Protein coding
Short Description
sodium hydrogen exchanger 2
Curator Summary
member of Sodium proton exchanger family
Computational Description
sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5612 Blast hits to 5606 proteins in 1611 species: Archae - 51; Bacteria - 3727; Metazoa - 852; Fungi - 131; Plants - 439; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05040.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.
Computational Description
HASTY (HST); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 520 Blast hits to 417 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 183; Plants - 102; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR