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12-0238-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23311822 [Map]; Strand: c
      • AT1G62940.1 - [+] show detail - acyl-CoA synthetase 5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0238-1 - 5-prime edge 
    GTTTNGGGTG ANGGACAGAN NNGNGCNCNA GGCNGAGAAN NACGCNGTGC 
    NCTNGNTAAG GGANTACGAN CAGCNCGTGG AGANATNATA TGATATAGTG 
    GCGNGNANGA AGGCNTNNCC CGANAANAAC ATCACANNGN TGGATTNNNA 
    NNACCTGNCC NGGNCNCCGN NCACNCGGGC NNTCTATANG CGCAAACNAN 
    ACCTCNNGCN CAATCAAAGC NTTNAAGAAA ATCCTTAGAT CGTACCGACT 
    CATAGCAACA ACTTTGCCTT TATTCTTCAT TGTAGCACAA CATATGCCAA 
    CGATACCGTA AATGTGAAAG AATGGGATCA AACCAAGCGT CACGATCTGA 
    CCGATCATTT CAGACCTGAC ACCGAAGAGA GTAGAGCAAA GATTGGCTAT 
    GAGATTGCGA TGTGTGAGCA TTACTCCTTT TTGTAATCCT GTNGTTCCTG 
    AAGAAAAAGG AAGTGCACAA AGATC

AT1G62940.1

Model type
Protein coding
Short Description
acyl-CoA synthetase 5
Curator Summary
encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.
Computational Description
acyl-CoA synthetase 5 (ACOS5); CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate:CoA ligase 2 (TAIR:AT3G21240.1); Has 80303 Blast hits to 72777 proteins in 3663 species: Archae - 1209; Bacteria - 52830; Metazoa - 3472; Fungi - 4003; Plants - 2782; Viruses - 1; Other Eukaryotes - 16006 (source: NCBI BLink).
Link
InterPro Scan - TAIR