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12-0263-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21680706 [Map]; Strand: w
      • AT3G58620.1 - [+] show detail - tetratricopetide-repeat thioredoxin-like 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0263-1 - 5-prime edge 
    CTAGACGGAG TCACTCCGGC GAGCTTTCCG GTTTAAGCCA GACCAGTCCG 
    GTTAAACCCG GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21680590 [Map]; Strand: w
      • AT3G58620.1 - [+] show detail - tetratricopetide-repeat thioredoxin-like 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0263-1 - 3-prime edge 
    CCGTCTAGCA AACTGAGAAG TGACAGCGGG TTTTCCGGAA GCAGAACCAG 
    AGGAGCTTGA ACTGCTGCCA CTAGCGGCGG GAGTGGCAGC GGCGGAGGAG 
    GAGCCACGAG GCCTCAACGG AGAACCAAAA TCGAGTTCTC GGAAATCTGG 
    TTTGTTGATG ACGTCATCGT CTCGTTGGAA ACTCAAAGAA TCACGGAATT 
    TACTGGTAAT GGAAGGTTCT AGCGAATGTC TTCTATAATG TGACATCTTC 
    TCGAAACCAA AGCCTCAGAA TCAATAAACA CAGAGAATCA AGAAGAAGAA 
    TTGGTGAAGA GAGAGAAGAG AGATTGTTGT GATATATATA AAAAGGAAGC 
    AGAAGAATGA GAATGAAGAT GTTGAAATCA AAAATAATTT TAGATTACCG 
    TTAAAAAAAT ATTATTAGTT TAAGTAAAAC GACTAATTGT CAGATTAAGA 
    CATTGATCTT TCTTAGTGTT CATCACGAGC TTCTCTTATC TTCCCCGACT 
    TCCGTGTGTT TCACGGCTGC TTGTCTGCTA AAAATTCGGT AATTTTATGC 
    AAAAATTTTA TTTAAAAAAA ATATAATCAT TTTANATATC ATGTACTATA 
    NANACTGACT GTGTCTGNGT CTGNATGTAA TGGTTGACTT TAAAGTTTGT 
    TTAATGTTTG AACANANTCT TAAATTTAAA ACTTGGTTTT TGCCNGACCN 
    NCAAAANTCC GGNATTTCCA CCCCNNCC

AT3G58620.1

Model type
Protein coding
Short Description
tetratricopetide-repeat thioredoxin-like 4
Computational Description
tetratricopetide-repeat thioredoxin-like 4 (TTL4); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 3 (TAIR:AT2G42580.1); Has 21785 Blast hits to 12872 proteins in 1130 species: Archae - 748; Bacteria - 6255; Metazoa - 5785; Fungi - 2015; Plants - 2355; Viruses - 3; Other Eukaryotes - 4624 (source: NCBI BLink).
Link
InterPro Scan - TAIR