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12-0318-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23187241 [Map]; Strand: c
      • AT1G62630.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0318-1 - 5-prime edge 
    CCGNTCAACC CCCTTCATCA ACAATGATGC ACCAACAAGA CTACCAATGA 
    TATCATAACC CATGNNCTNA GCTCTTTCTA TGCCCTCACT TGTATCAATC 
    ATCTCTTCGC AAATCCAGTA CTCTATCAAT TTTTCTTTAT AAATTTTCTC 
    ATCTTCTGGA AATAAAGCGC AATACAACAA ACATGATTTG ACAAGCTCTC 
    CCCTAAGATT ATCATAGCTA TACTTCAAAA GTGGAAGGAT CTTATCTTCC 
    ATGCCAGAAA ACTCTGCNGC GNATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23496186 [Map]; Strand: w
      • AT1G63350.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0318-1 - 3-prime edge 
    TTGATCGGGA TGGAAAAGCA TTTGTGAGTA TGCATGATGT TGTTCGTGAA 
    ATGGCCTTAT GGATCGCATC TGACTTGGGA ATACAAAAAG AGAGTTTCAT 
    TGTGCGCGCA GGGGTTGGCT TATTTGAAAT TCCAAAGGTT AAGAATTGGG 
    AGGTTGTGAA AAAGATGTCA CTGATGAATA ATAATATTGG TTATCTCATT 
    GGCAGTCTTG AATGTATGGA ACTCACAACT TTGTTACTGC AAAGCACAAA 
    CTTGGAAAAG ATCTCAAGTC AATTCTTCAA GTCCATGCCA AAGCTAGCTG 
    TTTTGGATCT TTCGGGTAAT CAAAATCTCT TTGAATTACT GGACGGAATA 
    TCGGAACTAG TGTCCTTGCA ATATCTCAAC TTGTCAGATA CGGGTATACG 
    TCATTTGTCT AAGGGTCTAC AAGAGTTGAG AAAACTAATT CACTTGAATT 
    TGGAGAGAAC ACGTAATCTT TCGAGTATTG CTGGGATATC AAGTCTGCAT 
    GGTTTGAAAG TTTTGAAATT ATCTGGTTCT CATCTTTCAT GGGATCTCGG 
    AACAGTGAAG GAGTTGGAAA CCATGGAACA TGTANAAATT TTAACCACAA 
    CGATCGATCG TCCTCTATAT CCANAGCAAT TTTTGANCTC TCATAAATTG 
    ATGANTCGTA CACGGNTTCT AAAGATCTCC NATANCAATA TGCNNNCNTC 
    NGGATATCAC TTCCATAACT

AT1G62630.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G63360.1); Has 16042 Blast hits to 14596 proteins in 629 species: Archae - 18; Bacteria - 843; Metazoa - 2230; Fungi - 170; Plants - 12480; Viruses - 6; Other Eukaryotes - 295 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G63350.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G62630.1); Has 18724 Blast hits to 16763 proteins in 698 species: Archae - 14; Bacteria - 926; Metazoa - 3029; Fungi - 209; Plants - 14107; Viruses - 4; Other Eukaryotes - 435 (source: NCBI BLink).
Link
InterPro Scan - TAIR