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Mutant Lines
12-0347-1

12-0347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 22465820 [Map]; Strand: c
  - AT1G60990.2 - [+] show detail - Glycine cleavage T-protein family
    Distance: -396; Region: promoter
  - AT1G60990.3 - [+] show detail - Glycine cleavage T-protein family
    Distance: -396; Region: promoter
  - AT1G60990.1 - [+] show detail - Glycine cleavage T-protein family
    Distance: -396; Region: promoter
  - AT1G60995.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon15 (CDS)
Flanking Genome Sequence: 12-0347-1 - 5-prime edge
```
GTCANAAGGA CTTAACTCGT TTCTTTCGAT GTTTAGAGAT GTGAGAGATG 
AAGATGAAGC ACAAGTGTTT GCAGATACTA GTCCACCTCA AAACCCGCAT 
CATGATCCTC TTTCAGTTGA TTAAAGTTTT TTTTTTNTTN GTTGGCNGNA 
TATTTGGNNT TTTNGGCCTC NGGTTTTNGT NCCTNGTTNG CTNGTTTAGT 
NNCNGGCCAA AAANAAACNA NCTTTTGAAA TNTTANGGGG ATNAAAAATN 
GGNAAGNAAG GGNNAAAAAA AAAANATTTT NAAAAAGNTT TAANCCGGGG 
CCGGGGNNCN CCCCCGCCCC NTANANANNG GNNNTAGGGG GGAGGGGGGG 
GNNANNANNC CNGGGGGGGG GNNAAANNCG GGCNNAANAN GAGGNGGNGN 
GTNAAANNCC CCGGGGGGGG GNGANNNNCN NCCNCTNNGG NGGGGGNNNN 
NNCCNNCNCN CGGNGGGG
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 22465936 [Map]; Strand: c
  - AT1G60990.2 - [+] show detail - Glycine cleavage T-protein family
    Distance: -512; Region: promoter
  - AT1G60990.3 - [+] show detail - Glycine cleavage T-protein family
    Distance: -512; Region: promoter
  - AT1G60990.1 - [+] show detail - Glycine cleavage T-protein family
    Distance: -512; Region: promoter
  - AT1G60995.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 0; Region: exon15 (CDS)
Flanking Genome Sequence: 12-0347-1 - 3-prime edge
```
CTTCTGACGA AGCCCCGCCT AAAATCCATA GAAGCATCGA GCTGAACGAG 
CTCATTGCGC CTGCTTGTTG TGGGTTAGGC TCTGCAGGAA CGGTGTTTGC 
TTCATTCTCT TCTTGCTGCT CTTGATATTG TGCCGGATTC CCGACACCTC 
CTCCATCCGC TGTAAAAGAT CTTGTTTCCG TGTTTTGGTT TGGGGTTGTG 
TGGTTAGGAC CAGACGGAGT TCGGTTTCTT GTTGTTCTGT TCAGCCTTGT 
GATGTGAAGA GTTGATGCTA GGATTGTTGA GGAAGTGATG TGAAAGTCTG 
GGTGTTGCTG AAGGTGTGAC TGTCGGCTTT GAAGGAACCT CTGAAGAGCT 
GGTACCTGTA ATTTTGTGAT AAAAACTTTG AATTGAAGCT
```

AT1G60990.1

Model type: Protein coding
Short Description: Glycine cleavage T-protein family
Computational Description: Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60990.2

Model type: Protein coding
Short Description: Glycine cleavage T-protein family
Computational Description: Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60990.3

Model type: Protein coding
Short Description: Glycine cleavage T-protein family
Computational Description: Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60995.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link: InterPro Scan - TAIR