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12-0413-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18046699 [Map]; Strand: c
      • AT4G38600.1 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: 0; Region: intron7 (CDS)
      • AT4G38600.2 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 12-0413-3 - 5-prime edge 
    GGGTTCGAGG TATGCTGTTT ACGATATAAA TTAAGTTTGA CACGACAGTG 
    TGTGCAACTT CTTACATGTT TTTCTTCTTA TGTAGCTTCT TGGCTGGTGT 
    CTTGGCATGG AAAGACCCAC AGGTCTTGGT TCCTGCTCTA CAAGTTGCAG 
    AGATTTTGGT GGAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12640180 [Map]; Strand: w
      • AT1G34540.1 - [+] show detail - cytochrome P450, family 94, subfamily D, polypeptide 1
        Distance: 1630; Region: intergenic
      • AT1G34545.1 - [+] show detail - transposable element gene
        Distance: 901; Region: intergenic
    Flanking Genome Sequence: 12-0413-3 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CTCAAAATAC AATATCGCTG GCATCGGATT CTTTGAGTTA ATAACAGTAT 
    TTGTAGCTTC CAAATACACA AACACTTTTC TCTTAAGTAG ATCGAAGTAA 
    AATCTTTTGT CTTATTGTAC TAAATCTATT TCAATTCACT AACAGCCTGT 
    TAATTGTATT CATATGACTC GTATCATATT ATCACACAAT TCTTTCATAT 
    ACGGACAACC TGGAGAAATG TTTAAGGATA AGTCAGCCAT AATTTTTAAT 
    CACAATTGTT TTTTTTTTTT NTANAAAAAN CTNNCNNNCC CANNAGNGGG 
    GGGNNTNGCC NNCCTTTNTN GNTTNGNCCC NCNNGNNAAN GGGGNAANCC 
    CCNAGGGNNG TTTTNNTAAA NANNNTCCTT TNNTNNGGNG GGGCCNAANA 
    NNNTTTTNTT TNNAAACTTN GTTTTTTNNG GCNTNGCNAA NCNGNAAANC 
    TTNGGAAAAA NANTTCGNNG NNCNGGGTTN NCCNCTTNCC CTTTTAAAAA 
    AAAAATTAGG GGNNNGGGGA AATGGGGGGT CCCANATTTT TTTAAAAGGN 
    NNNAAGGGGA ANTNANTNCC CCNGAAATTT TTAATTTAAA CCCGGGGCCC 
    CCAAANTNAA AACCTGGNNA TTNNTTTTNT TTANCGGNGC CCCCTTGGTT 
    TTCTTNGGNT TTTTTTTTGG GGGNGGGGGN AANGGNTTTC CCCGGCCNAN 
    NCCCNGNAAN GNTTNANCCT TGAAAGGCCC CCTTTTTTTN TTTTTT

AT1G34540.1

Model type
Protein coding
Short Description
cytochrome P450, family 94, subfamily D, polypeptide 1
Curator Summary
member of CYP94D
Computational Description
"cytochrome P450, family 94, subfamily D, polypeptide 1" (CYP94D1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily D, polypeptide 2 (TAIR:AT3G56630.1); Has 28664 Blast hits to 28574 proteins in 1494 species: Archae - 44; Bacteria - 2718; Metazoa - 10657; Fungi - 6200; Plants - 7985; Viruses - 3; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G34545.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT4G38600.1

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38600.2

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink).
Link
InterPro Scan - TAIR