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Mutant Lines
12-0422-1

12-0422-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 18193791 [Map]; Strand: c
- AT1G49190.1 - [+] show detail - response regulator 19
  Distance: 193; Region: intergenic
- AT1G49200.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -4436; Region: intergenic

NGTACACCTT TNNANTANNN TGCTCGAATT NTATAAATTT GANTCNCTCC 
ACANATTAAT TAGNNNTTNA GTCCGATTNT ANGNTNAAAT NCANTTTCTT 
GTTNANNACN TTATNATNCC ANAANNAATC NAGGAAANNG GAACAATGGG 
NNCATATAAT GAGNTTANAN GAANGANTAG TGAAACAATG TTGAGACNCA 
CAAGGGAAGT CCCATATTAT TNGTCATACN TANACTGCCT GTGGGANCAG 
AGAAGGGCTC TATGACNAAN TATNGNNGNA NCCATCGATT AGANNCTCTT 
GTGGATCATA TGGCAAACTN GGATNAGTGA GTTCAAGATC ACCANCCCGG 
GCCGNNNACC ACGCNTGCCC CTATAACTTT GAATNNTGAA TTAAAGTTTG 
NCCAAAAAAG GCCAGCTAGA TAGATC

3 prime edge [+] show sequence

Chromosome: 1; Position: 22664508 [Map]; Strand: c
- AT1G61420.1 - [+] show detail - S-locus lectin protein kinase family protein
  Distance: -545; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
NTAAGTGGAA TCATGTAATC ATGCCTAATA AAATATACCT TAGTCAATTT 
TACCAAACAG TTTCCACATA GATAAAAAGT TTCTGAATAA TAAAGGAAGG 
GATGTAATTT TACAACCATT AGAAATTTTG ATCCTTATAG AGAATAATTC 
CAATTCTACA GTTTCAACGT CCTTGGATCA CAGACTCTGT CATCTCATTG 
ACAGTGATCA TCGAATCATT TGACGGTGAT TCGTCTTTTC TAGTGTGCAC 
TACAAATGTG GGTTTTTTGG GCAGAGGAAG ATC

AT1G49190.1

Model type: Protein coding
Short Description: response regulator 19
Curator Summary: member of Response Regulator: B- Type
Computational Description: response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1); Has 45111 Blast hits to 44660 proteins in 2702 species: Archae - 154; Bacteria - 38880; Metazoa - 15; Fungi - 96; Plants - 2828; Viruses - 0; Other Eukaryotes - 3138 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G49200.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 8744 Blast hits to 8720 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2273; Fungi - 539; Plants - 4805; Viruses - 46; Other Eukaryotes - 1081 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G61420.1

Model type: Protein coding
Short Description: S-locus lectin protein kinase family protein
Computational Description: S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 124891 Blast hits to 122927 proteins in 4589 species: Archae - 114; Bacteria - 13852; Metazoa - 46086; Fungi - 10635; Plants - 35417; Viruses - 454; Other Eukaryotes - 18333 (source: NCBI BLink).
Link: InterPro Scan - TAIR