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12-0476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356071 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -911; Region: promoter
    Flanking Genome Sequence: 12-0476-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACCGA TAACGGTCGG TACGGGGATT 
    TTCCCATCCT ACTTTCATAN TCTATCGCAT TTNCATTGGG GAAGCTCNTC 
    AACTTCTGAT TCATACCAAG ATTCAAGAAA AAACAAAAAG AGTTTCAAGT 
    TGCAAGATTA TGTATAATCA TAACTTCACT TACAAATAAT CAATGCAAAA 
    GGAAACATAA ATATTACTTA GTAGCCTAGT AGGGAAAGNG NAGTAACGTA 
    TTCGGATATA ATACGGATAG AGGAAGGAAT TAGTGATAGA CCCACGGNGG 
    GGCTAAAAGG ATGTGGACAG GAGTGTGTAG GTCCTCTCCT CCTCCTCCTC 
    TACGGTTTTC GCTATTTCTA TGACGTTGTG ATGATCATAT TGGCCTTTTC 
    TTCTCCCCCT GNCGATTCAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23345640 [Map]; Strand: w
      • AT3G63190.1 - [+] show detail - ribosome recycling factor, chloroplast precursor
        Distance: -867; Region: promoter
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: -262; Region: promoter
    Flanking Genome Sequence: 12-0476-1 - 3-prime edge 
    CTATAATTTT TGGTAACAAA TTATTATCTC ACAAATAACT AAATCTCGTC 
    AAGTCAATTT TTATTTTTTA ATTAGCCGAT GTGAATAATC CTTTTTTTTT 
    GACATATTTT TTTCTTTTGT TNGGGCAGCC TAATATTTGT TGCTTGATAA 
    AAAAAATTAT ATGTTCTACT AAACAAAAAA NGCGACNCGA GATAGTTTTC 
    TTATTTTTTT TCCCAANCTN GTNTATTATN CATGTATAAT TAATCTATTT 
    TNAAAANCCT TAAACTATNG CTANACNCAT AAATNTAAGT AATTCNCNAA 
    TTAAAANAAC ATAAATCAAA GTNTNCTNGA CNGGAAAAAA AATCAAAGTN 
    TAATCAAAAT TTTNCTAANC AAAAAANCNT TGANGGGGGG GTNGGACNGT 
    NCTCNCCCGN GNGANTAGGC NTGTCANTNT NAAGGNCANG GAGTAAGCNC 
    NAACCTNGGN NGCCTTACCG GCTNGGCTCC CGCTAATCAN ATNGGGGCCT 
    NTTNTTACTA ATCNACTNGT ATCTTTTNAT TNAAGGCTAA TNAACTCTTC 
    TTTANATATC CCCTNCCCAT CNTAAATGAG GGACGGNGNA NTCNACAACA 
    AACCGGCAAA AGTTTTTAAA TTNGTTTATG AAGGAGNATN TCANTGGCCC 
    CTTTNNNTTN AAATATTTTT TNGAAAANCC CTGNANAATT TNCCCCTTGG 
    ATTN

AT3G63190.1

Model type
Protein coding
Short Description
ribosome recycling factor, chloroplast precursor
Curator Summary
The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.
Computational Description
"ribosome recycling factor, chloroplast precursor" (RRF); FUNCTIONS IN: copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: Ribosome recycling factor (TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63200.1

Model type
Protein coding
Short Description
PATATIN-like protein 9
Computational Description
PATATIN-like protein 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR