1. Home
  2. Mutant Lines
  3. 12-0542-1

12-0542-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10710698 [Map]; Strand: w
      • AT4G19690.2 - [+] show detail - iron-regulated transporter 1
        Distance: 1683; Region: intergenic
      • AT4G19700.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 2863; Region: intergenic
    Flanking Genome Sequence: 12-0542-1 - 3-prime edge 
    GATTCATGTG CGTTGCATGT ATAGACAAAA CGATGAATAC GACGATGTGA 
    TGAATT

AT4G19690.2

Model type
Protein coding
Short Description
iron-regulated transporter 1
Curator Summary
Fe(II) transport protein (IRT1)
Computational Description
iron-regulated transporter 1 (IRT1); FUNCTIONS IN: manganese ion transmembrane transporter activity, zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, copper uptake transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 2 (TAIR:AT4G19680.2); Has 2264 Blast hits to 2071 proteins in 344 species: Archae - 4; Bacteria - 222; Metazoa - 575; Fungi - 696; Plants - 525; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19700.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
RING; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT5G45100.1); Has 639 Blast hits to 639 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 215; Fungi - 0; Plants - 349; Viruses - 21; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR