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12-0598-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 383112 [Map]; Strand: w
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -4665; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -2087; Region: intergenic
    Flanking Genome Sequence: 12-0598-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CACGTGAATA TTCCACATTG TCACATTGGG
    ATCTTCTAAT TACTACTAGA TTCACATGTG CTTATGCTAA TTAACCTCGC
    ACACGTTACA CTAAAATACG CCTATCAAAC TTGTTGGGAC GATGACCGTT
    GTGACCTCAA TGAAATTATT TTTTCCCATC CACCAAATAT GAAATTAAAA
    TAATACTGAT ACTGATTTTA CATGTAGTAC TAATTATTAG TATCTATTTA
    CGCGTGAAGT ATTGGACTTC TCTGACACGA CTGTTACCAA AAATGGAGTT
    AACGGCGTTA ACATTGCTGT TAACTGCGTG TCTGCTTACT AGATATGTTA
    GTGGGCCCAG TAGAGATTTT AACAGTTGTT ATGTGCTGAC GTGGACTCAT
    CTTTCTTAAC GCTGCTAATT AACTCCGGCA CAGGTAACAG TAACCAGTAC
    GACACCGTTT TTGGGGTTGC ATTCATTGGC AGCACAGAGC CGCGTCGCCA
    AACGTTAGCG TTTTAAAATC CACCCGCTCC ACATATTACT CACCACGTGT
    CTTTATTTAA AACCCGCGTT TCCTTCACGC GATTCTCATT TAACGGAGCC
    GTGACTTTTT CAAAAATTGT TTACCGTTGG ACAAATGTCT TATTGGCCTC
    ATAATGTCAG CCTTATTTAC GGAAATACCA TTGGACGGGG GNCGNGAATT
    TTATTAACAA AANAAGGGGN TTTTGGAGAA

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G01850.1

Model type
Protein coding
Short Description
endoxyloglucan transferase A3
Curator Summary
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational Description
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR