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12-0629-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19834879 [Map]; Strand: c
      • AT1G53180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1984; Region: intergenic
      • AT1G53190.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -2231; Region: intergenic
    Flanking Genome Sequence: 12-0629-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GTCACGGATG CAAAATCCAA AACCCCTACC TTCAAGAAAC CAACAAATAT 
    CTCGAATTCT TCAATCGCAA GTATCAAAAC CGATAGTGGA ACAAAGTCAT 
    GCTTATAAGA TAACAAAATG ATCTCGTTTG GGCATTAATC AAACTACACT 
    TTTTTGTTGC TAAATGAATT TTTATTATTT CATTCATTTT TAAAAACTAT 
    ATGTTAAACT ATTGTTTCTA TAGGCACCAT GTGTGTAATC CATGAGTTTA 
    TATATATAGG ATAGGATTGG TGGTATAAAG CAATTAAAGT TTTTTTTATT 
    GTAAGTAATA ATATTAGAAA TCATTAAATC CTATTAGATA ATACCAATCA 
    GTGAAAAATA GTAAAATGGT GTTGAAGTGA TATGAAATAG TGGTACAAAA 
    TAGATGGTTA TGGATGGNGG TATCGCTTTC GTTTTCGTTC TACCGCTTTC 
    ATTGTATTGT TTACCTACAA ATC

AT1G53180.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53190.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G15070.2); Has 8436 Blast hits to 8420 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2403; Fungi - 639; Plants - 3969; Viruses - 29; Other Eukaryotes - 1396 (source: NCBI BLink).
Link
InterPro Scan - TAIR