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12-0644-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14278838 [Map]; Strand: c
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0644-1 - 5-prime edge 
    TGCNTNGNTA TNANANGGAC AGGGGCANAC GAACATNNAA NNNNCTCTAT 
    NANTNATNGG NCTCNACNGN ACTCGNNNNN TTGATTGGNN TACNGACNCN 
    GGCCGAACAA CGANNCCCTG CANCATAAAG TGTATGAAAT GAGAGCCTTC 
    AAAAGCTAGA AAACTCTGAA TCATCAATTT CAGTTCTTAG CTTATCGGTT 
    TCAAAATTAG ACATTTTGAA TTTACCTGCA GTGTCCCATA GCCCTAAATT 
    AACGATTTGT TCATCCACAG CTACATTGGC ACTGAAATTG TCGAACACAG 
    TCGGTATATA ATCCTGCCAG ACATGAAAAA ACCAGCAAGA ATCATGAATC 
    ATACATCAGA GTAAACCCTA GATACTCGAA ATCAACTTTA AGCTAAACCC 
    ATTTGTGAAC TCCAAGAACA CAGATGTATC TTTTAAGGTA AACCCNNNNN 
    NCAAAATNAA ANNTNNNNNN NNGGCCNNNN NCNCNCNNGC NNTNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14278912 [Map]; Strand: c
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0644-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATACG 
    AAAATGTACT CAAGAAGGTA AAAATGTTTT GAATCTTGTA CTGGAACAGA 
    TTTGGATAGT GAATGTGGTG GATGTTGAAA TGTGTATATG AGTTCTGATA 
    TGATTGTTGT TTTTGACAGT GGATGCCTGA ACTTCGTCGG TTTGCGCCAA 
    ATGTTCCCAT AGTTCTTGTT GGTACAAAGC TAGGTAAGTT TTGTTTTGCA 
    GATTTTCTGT TTTGAAATTT CTCTTGGCTA ATCCATTACG TCTTGGTGTT 
    GTTTAGATCT CCGGGATGAC AAGGGATACC TCGCGGATCA CACCAATGTC 
    ATTACCTCTA CTCAGGTATA TATGGGTAAC CTCGCTATTT GTTCTGTTTT 
    GAAAATGAAT CTTTAAGACT TGAAAACTTT TCTCAAGCT

AT4G28950.1

Model type
Protein coding
Short Description
RHO-related protein from plants 9
Curator Summary
A member of ROP GTPase gene family.
Computational Description
RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).
Link
InterPro Scan - TAIR