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12-0683-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • albino value (PATO:0000968)
    (Seedling::albino)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13935015 [Map]; Strand: w
      • AT4G28020.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-0683-1 - 5-prime edge 
    GCTTTGACTN GACCTTGNCT CTGGCAAGCA CTACTTTTGC AAGGTAGATC 
    CCATAGACTT CTCAANTTCG TTGATCCTAT TGTCNNAATN TTNTTCTCGN 
    CTTCGCCATC TATACNCCTT CTGCAAGAAC ATGCTCAATA AAGTGTTAGT 
    TTCTCGAAAC CAGCTCAATA ACAGGTATTG GGAAGAGGAA GTGACAGAGA 
    GGTAGAGAGA AAGAGATTAC GCGAGAAGGC AGCGGATACA GATACTACGG 
    CGAGTGTAAA GGCTAAAGCC GCCGTGGTAG AGCCGTGGGA GCGTCCTGAT 
    GTAGCCATAG ATGAACTGTT TGCTGCGACG GCGAGTGGAA CGTTGCGACG 
    GCGGCGGGAA TGTATCGGTC CGGGAGTCAA ATCGGTTTTT ACTTTTAGTT 
    ATGGGAGAGA CAGTTATAAT AACTGTAAGG CCCATATAAT TATCAAATGC 
    TTAAAAGTCC AGCAACGGCC CACTGAATTT GTTGGATTTG CCTATATTTT 
    ATGTTCTGTA AGTAAATACT AAACTTCTTT CTCAAANNAA AAAAANNNNN 
    NNNNTTTNNN NNNNNTTTNC CNNNNNNNNN TTTTTTTTTT NNNNNAANAA 
    NNNNNNNNTT TTNNGGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13934900 [Map]; Strand: w
      • AT4G28020.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-0683-1 - 3-prime edge 
    GTCAAAGCTC AGCAGGTGAG TTTTTTTTTA ACTTGTACTA GTCTCTGAAA 
    TATAGGAATT TANATTCAAA TCATTCAAAT GCNCATCAAA ATTGATACTT 
    GTCAAGATTG GAGGAAATCT CTATGGATTT ATGTTCACTC TCTTGATGCA 
    ATTGAAAGCT GTAGGCTTTA CGGGAGGCGT TAGCACAGAC TGAGTCACAT 
    GATTTACACA GCACAATATA CCCGATGCGA CCTATTGGCA CTATCCAGTC 
    TTGCTTCTCT ACTAGGTAAC ATGATCCTCA TGGCTTTCCA GTTTCAGGGG 
    AGCTTTATAC TGTTTTAAAA TAATTGGCTT CTTAAGTGCT ACTTCTTGGT 
    TTTTGCAGGA ACGGGACACC GAGGCAGCCA TTGCTTGTTT CTCTTGCGAG 
    GGCATGTTTG ATCTTTGATC CGGCTTTGGT TCCTCCTGCG TCTCTTGAGG 
    GTCTTGAANA GTATTCTCAT TGCTGGATAC TCTATGTGTT TCATCTCAAT 
    ACTGATATCG AGAAGCTATG GAGAAAACCA TCTCAGTCGA AGCTCAAGGC 
    AAAGGTATGT TTCTTTTCTT TTGTTTGTTT CTATGTTATG ATGTTACTCA 
    GTCTGAGGTT TTTGGGGTGT TGTGAATTTA GGTGANAGTG CCACGGCTAA 
    ATGGGGAACG GAAGGGAGTC TTTGCTACNC GGTCCCCTCA TCGACCTTGT 
    CCCATTGGCC TNCCGTTGCT AAGGTTTCTG

AT4G28020.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR