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12-0695-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6173415 [Map]; Strand: c
      • AT3G18035.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: -1691; Region: intergenic
      • AT3G18040.1 - [+] show detail - MAP kinase 9
        Distance: -1304; Region: intergenic
    Flanking Genome Sequence: 12-0695-1 - 3-prime edge 
    GTCGTGTCGT TTTCATACAA CAATTTATGT ATGCTCATTC TTTTAATACT 
    AATATATCTG TGTTGTGATG TGTGCATGCG TGTGCTCGAA TACTTTCAAG 
    CAAGGGTCAA ACAAAGTGCG GCTGGTAATA GACGATCAGA AGACACAATC 
    ACCAGACACC AAGTAAGCAG ATGACAAAAG ACGATCACCA CACCAGAATT

AT3G18035.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
A linker histone like protein
Computational Description
HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18040.1

Model type
Protein coding
Short Description
MAP kinase 9
Curator Summary
Encodes a protein with similarity to MAP kinases (MAPK9).Expressed preferentially in guard cells and appears to be involved in reactive oxygen species mediated ABA signaling.
Computational Description
MAP kinase 9 (MPK9); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 122703 Blast hits to 121413 proteins in 4361 species: Archae - 122; Bacteria - 13975; Metazoa - 45582; Fungi - 12439; Plants - 29950; Viruses - 578; Other Eukaryotes - 20057 (source: NCBI BLink).
Link
InterPro Scan - TAIR