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12-0713-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18061794 [Map]; Strand: c
      • AT4G38640.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0713-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    ATCGTAGGTG AAGGAAGAGG AGTTCCCGTA ATCGTTATTT CTATGAAAAA 
    TGGAGAAGAT TCCAAAACCA AAGGTGGAGA GTACGAGAAG ATCGAAGAGA 
    AGTAGGAAAG GGATGTCCTT GAAAGTTCTT GGGCCAAAAT TGTAGGAGAT 
    CTGAAGAAAC TGAGTTGGGT CGGATTCGGG ATCACTTCGA CGCGGAGAAT 
    CGAGAGCGGA CGTGGAGGGT TTAGAGAGAA GAGGGTGTGA CGGAGAGGAT 
    GAGTCGTAGA TTGCAGCGAA TTTAGTAAGG TCGCCGTCGT CCGCCGCCAT 
    GGTCGTCCAC AGAGAGAGAA GAAAGCTCCG CCTCTGGAGC TAAATGATTA 
    AAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18061795 [Map]; Strand: c
      • AT4G38640.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0713-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TAATTTTCAC CTCTAGCTCC TGCGTCAAAA 
    ATTCTACCTT TACGAAAATT TCGGATGGGT ACTACCTGGG CTTCTTCGAG 
    TGTCATGTAC AGGCATGGTT TCTTCGTCTG ATCCAGTCTT TGAGAAGGAT 
    TTGATCTGGA CACNTTGTTG TAACGCTTAT TTTAAGCGTG CCCTTCTGTT 
    TTAGCGTCCT GCTTTTGCTC AAACACTACA CTAAGCAGAT TGTTTATGCT 
    TGTTTACCTC TCTTTGTCCT TTTTCCCATC TTTTTCAATG TCTATTGGTT 
    TGTCGCCTGT ACTCTTAGCT CTTCTTGTAG CGATGCCCTC CCTCTAGCTT 
    ACAGAATACT TGTCCTAGTC TTTGTTTTCT TGATCATCGG GATCATTGTC 
    TGGATCATAG TAGCTAATTG GCACAGAATT GAGCTTACTA TCCAAATCAT 
    CAGTGTTGCA TCTGATGCCT TGTCCAAAAA TTTGAAACTT TTTGTTGTGC 
    TGCCGCTGCT GACTCTCGGG TTAGTGGTGT ACTATGCGCC GATTGTGGTG 
    TTCTTGGTGT TTGCAAGGTT TAATGGGAAG TTTGTGCCGC NAGAGTTGGA 
    TGGTCANNAC TTTTGNGAGT GGAAANAAAA NTCTTGGGTT CCTGCGAATA 
    CNCTCTTGCC ATTTTNACNA AGATNNGGNN TNTTGCTGNA TGGNGGAAAT 
    GCANNNGNTG TNANAANNNN A

AT4G38640.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR