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12-0776-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28787880 [Map]; Strand: c
      • AT1G76705.1 - [+] show detail - calmodulin binding
        Distance: 552; Region: intergenic
      • AT1G76710.1 - [+] show detail - SET domain group 26
        Distance: 1849; Region: intergenic
    Flanking Genome Sequence: 12-0776-1 - 5-prime edge 
    GGGAAAAACT ANCAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCNN GNCANGAATA TNAACAAGGA CNGTGGTGAC 
    ATTCAANAAT TGATNGCATT NTACCAANNG NTNNTAATCT CCTTGCNCNC 
    TTAGGGTGAC GAGATAACCN ACNANCGGNC ANTTAGACCN NACGTGCGGT 
    GATNATATAG CCTGTTATAC ACAGGNTCGG GTCAAATACT NTCCATTTAT 
    TAGCTGATAC GCTCTTACTA ATTTTTGGTT TAGATACTGA TTGTATTACT 
    TTCTACTAAA CCATTGCTTT TCATTTATCT AACGTCATGC TCTGCCTCCT 
    TTGTATTAGT GGATCACGTT GACTTATTGT TTTAAAGAAA ACGGCTAAGA 
    AGAACAGATG TACTAGTTTC GATTTGCTAC TTGTTCTTTT ATTTCGACCC 
    CNGAAACTTG TTCAAGANAT ACAACTTCAT TTACAAGTTT AATTANACTA 
    ANCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22712659 [Map]; Strand: w
      • AT5G56080.1 - [+] show detail - nicotianamine synthase 2
        Distance: -295; Region: promoter
    Flanking Genome Sequence: 12-0776-1 - 3-prime edge 
    GNGNGANNNN TNGCGCAGCG GGTATCANGN GNCCGGTNCG NNTTNNAGTC 
    NCNGANTGCT NGNAGNAAGN CATTNACTGT GTNNCNNANC CANAACAGAG 
    NNNATNNTAN CTAAGAAGAA TANCATTACA NCACNGANNC TACCAGGNAA 
    NAGGCNCTCT GTNGACCTAT GCTGANCTCC GAAATNAAAC ATAAAATAAN 
    AATAACAAAA TTTAGCCAAG AATGGACCCC ACATGCNGTC AATAAATAAC 
    GACCCCTTGC GAGGGTTAAG GCAACACAAC AACACAAGCT

AT1G76705.1

Model type
Protein coding
Short Description
calmodulin binding
Computational Description
calmodulin binding; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 12 (TAIR:AT5G03960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76710.1

Model type
Protein coding
Short Description
SET domain group 26
Computational Description
SET domain group 26 (SDG26); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.2); Has 5533 Blast hits to 5441 proteins in 455 species: Archae - 0; Bacteria - 385; Metazoa - 2333; Fungi - 552; Plants - 1033; Viruses - 4; Other Eukaryotes - 1226 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56080.1

Model type
Protein coding
Short Description
nicotianamine synthase 2
Curator Summary
Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.
Computational Description
nicotianamine synthase 2 (NAS2); CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: nicotianamine synthase 1 (TAIR:AT5G04950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR