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12-0789-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23425581 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 12-0789-1 - 3-prime edge 
    ATCGGTAGAA TCTTCTTTGG TAGATGACAT TCATTGGAAC TGAAAATATA 
    TATATATTTG TCCAATCCAG GAAGTGAAAG AAACATTATC AGAGCTAAGC 
    TACGTGACGT CGACACTGTT TACAACGGAG GTAGCATATG AAGCATTCTT 
    GGACAGGGTA CATGTGTCTG AGGTAAAACT CCGATCGAAA GGGCAGTGGG 
    AGGTGCCACA TCCATGGCTG AACCTCCTGG TACCAAGAAG CAAAATCAAT 
    GAATTTGCAA GAGGTGTATT TGGAAACATA CTAACGGATA CAAGCAACGG 
    CCCAGTCATC GTCTACCCAG TGAACAAATC AAAGTAAGAA AGAAAGAAAG 
    AAAGAGCTAG TCATGATTTT GTTTCTTTTC ACTTGTTGAC AAAACAAAAG 
    CATGTTGGTG AGCAGGTGGG ACAATCAAAC ATCAGCAGTA ACACCGGAGG 
    AAGAGGTATT CTACCTGGTG GCGATCCTAA CATCGGCATC TCCAGGGTCG 
    GCAGGAAAGG ATGGAGTANA ANAGATCTTG AGGCGGAACA GAANAATACT 
    GGAATT

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR